Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ARMC10P1-201ENST00000313754 855 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MIR718-201ENST00000390190 70 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 UNC93B5-201ENST00000530315 699 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 CYP2T3P-201ENST00000601990 817 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC069236.1-201ENST00000604339 616 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC008694.1-202ENST00000636953 945 ntBASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC125437.2-201ENST00000625180 2167 ntBASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC26.78■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AL158211.5-201ENST00000623583 2518 ntBASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 KRT18P68-201ENST00000392293 1000 ntBASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 BX276092.2-201ENST00000417668 665 ntBASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 KRT18P35-201ENST00000510488 1269 ntBASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TCF3P1-201ENST00000423021 1937 ntBASIC26.77■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC26.76■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MCRIP2P1-201ENST00000394346 511 ntBASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MKRN4P-201ENST00000444706 1521 ntBASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC26.75■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms