Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MIR6811-201ENST00000620409 58 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 AC104966.1-201ENST00000467010 1464 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 AC083806.2-201ENST00000617795 2685 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL5A1P20908 AL359092.1-201ENST00000417156 265 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A1P20908 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 AC009963.3-201ENST00000458090 486 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 RN7SL834P-201ENST00000461450 286 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 LSM3P4-201ENST00000502948 309 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 SNX18P25-201ENST00000510539 758 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A1P20908 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A1P20908 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A1P20908 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A1P20908 SNX18P10-201ENST00000625014 519 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 AL357140.4-201ENST00000636827 412 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 AC116631.1-202ENST00000640984 683 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A1P20908 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A1P20908 AL596244.1-201ENST00000567068 3779 ntBASIC6.43□□□□□ -1.38
COL5A1P20908 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A1P20908 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 ALDH1A1-201ENST00000297785 2107 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.42□□□□□ -1.38
COL5A1P20908 RPL12P13-201ENST00000310055 497 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 RNA5SP65-201ENST00000363166 119 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 CYCSP17-201ENST00000407870 315 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 C2orf76-203ENST00000409523 747 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 RN7SKP206-201ENST00000410823 293 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 HMGN1P20-201ENST00000411849 300 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.42□□□□□ -1.38
COL5A1P20908 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.42□□□□□ -1.38
COL5A1P20908 AL354707.3-201ENST00000427308 331 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC6.42□□□□□ -1.38
COL5A1P20908 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.42□□□□□ -1.38
COL5A1P20908 AC009879.1-201ENST00000520029 839 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 TRIM77BP-201ENST00000524985 1119 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 RN7SL404P-201ENST00000582421 281 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 MIR4701-201ENST00000583094 63 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 AL589863.1-201ENST00000595383 631 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 CIR1P2-201ENST00000514821 1342 ntBASIC6.42□□□□□ -1.38
COL5A1P20908 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A1P20908 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
COL5A1P20908 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A1P20908 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A1P20908 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A1P20908 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A1P20908 LCN1P2-201ENST00000372030 223 ntBASIC6.41□□□□□ -1.38
COL5A1P20908 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A1P20908 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL5A1P20908 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms