Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KRT8P45-201ENST00000414328 1447 ntBASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 SKP2-204ENST00000508514 821 ntTSL 3 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 AL136038.3-201ENST00000561909 1096 ntBASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 C9orf163-202ENST00000624034 2573 ntBASIC30.41■■■□□ 2.46
COL17A1Q9UMD9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 AP000692.2-201ENST00000608391 879 ntBASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL17A1Q9UMD9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 AC008040.2-201ENST00000461049 708 ntBASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 CALM1-205ENST00000553542 877 ntTSL 5 BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 AC010653.2-201ENST00000623505 997 ntBASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 AC116562.4-202ENST00000641738 218 ntBASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 AC092338.2-201ENST00000568827 1415 ntBASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC30.39■■■□□ 2.46
COL17A1Q9UMD9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
COL17A1Q9UMD9 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 FAM99A-202ENST00000538190 1989 ntBASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 PRSS44-201ENST00000515154 1146 ntBASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 AL023973.1-201ENST00000624619 620 ntBASIC30.38■■■□□ 2.45
COL17A1Q9UMD9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 AC096733.2-201ENST00000609937 1394 ntBASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 VENTXP5-201ENST00000523979 775 ntBASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC30.37■■■□□ 2.45
COL17A1Q9UMD9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC30.36■■■□□ 2.45
COL17A1Q9UMD9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 AL845331.1-201ENST00000424978 1190 ntBASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 UNC93B7-201ENST00000509439 705 ntBASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
COL17A1Q9UMD9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 SDHD-206ENST00000528182 754 ntTSL 3 BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms