Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 BHLHE23-202ENST00000612929 1109 ntBASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 AC135050.7-201ENST00000624508 2218 ntBASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
VCX3AQ9NNX9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCX3AQ9NNX9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VCX3AQ9NNX9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 AC133637.1-201ENST00000624115 1537 ntBASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 Z92544.1-202ENST00000571933 1220 ntBASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 AC074183.2-201ENST00000623112 922 ntBASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 NOC2LP2-201ENST00000407594 1944 ntBASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCX3AQ9NNX9 AC012313.1-201ENST00000593393 3059 ntBASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
VCX3AQ9NNX9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCX3AQ9NNX9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
VCX3AQ9NNX9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCX3AQ9NNX9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.57■□□□□ 0.56
VCX3AQ9NNX9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.57■□□□□ 0.56
VCX3AQ9NNX9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms