Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL12A1Q99715 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.54■□□□□ 0.4
COL12A1Q99715 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.54■□□□□ 0.4
COL12A1Q99715 AC104692.2-201ENST00000603054 253 ntBASIC17.54■□□□□ 0.4
COL12A1Q99715 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.54■□□□□ 0.4
COL12A1Q99715 AC080038.3-201ENST00000623346 1952 ntBASIC17.54■□□□□ 0.4
COL12A1Q99715 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
COL12A1Q99715 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.54■□□□□ 0.4
COL12A1Q99715 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
COL12A1Q99715 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.53■□□□□ 0.4
COL12A1Q99715 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 AL356652.1-201ENST00000615962 565 ntBASIC17.53■□□□□ 0.4
COL12A1Q99715 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL12A1Q99715 AC022898.2-201ENST00000616822 1312 ntBASIC17.53■□□□□ 0.4
COL12A1Q99715 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
COL12A1Q99715 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL12A1Q99715 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL12A1Q99715 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL12A1Q99715 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL12A1Q99715 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.53■□□□□ 0.4
COL12A1Q99715 DGCR10-201ENST00000609839 495 ntBASIC17.53■□□□□ 0.4
COL12A1Q99715 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.53■□□□□ 0.4
COL12A1Q99715 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL12A1Q99715 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL12A1Q99715 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL12A1Q99715 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.52■□□□□ 0.4
COL12A1Q99715 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL12A1Q99715 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL12A1Q99715 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
COL12A1Q99715 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL12A1Q99715 AC092119.3-201ENST00000612618 583 ntBASIC17.52■□□□□ 0.4
COL12A1Q99715 AL445675.2-201ENST00000620291 557 ntBASIC17.52■□□□□ 0.4
COL12A1Q99715 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.52■□□□□ 0.4
COL12A1Q99715 FAM99A-202ENST00000538190 1989 ntBASIC17.52■□□□□ 0.4
COL12A1Q99715 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.52■□□□□ 0.4
COL12A1Q99715 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL12A1Q99715 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
COL12A1Q99715 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL12A1Q99715 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
COL12A1Q99715 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
COL12A1Q99715 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.52■□□□□ 0.39
COL12A1Q99715 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL12A1Q99715 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL12A1Q99715 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
COL12A1Q99715 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL12A1Q99715 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.52■□□□□ 0.39
COL12A1Q99715 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.51■□□□□ 0.39
COL12A1Q99715 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL12A1Q99715 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.51■□□□□ 0.39
COL12A1Q99715 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.51■□□□□ 0.39
COL12A1Q99715 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.51■□□□□ 0.39
COL12A1Q99715 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.51■□□□□ 0.39
COL12A1Q99715 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.51■□□□□ 0.39
COL12A1Q99715 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
COL12A1Q99715 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.51■□□□□ 0.39
COL12A1Q99715 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL12A1Q99715 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.5■□□□□ 0.39
COL12A1Q99715 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.5■□□□□ 0.39
COL12A1Q99715 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.5■□□□□ 0.39
COL12A1Q99715 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.5■□□□□ 0.39
COL12A1Q99715 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.5■□□□□ 0.39
COL12A1Q99715 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL12A1Q99715 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL12A1Q99715 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL12A1Q99715 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.5■□□□□ 0.39
COL12A1Q99715 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms