Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 AC121338.2-201ENST00000622535 1744 ntBASIC19.03■□□□□ 0.64
VMP1Q96GC9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 DUSP5P2-201ENST00000426873 1033 ntBASIC19.03■□□□□ 0.64
VMP1Q96GC9 AC091874.3-201ENST00000512672 1195 ntBASIC19.03■□□□□ 0.64
VMP1Q96GC9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 AC018445.3-201ENST00000624177 1945 ntBASIC19.03■□□□□ 0.64
VMP1Q96GC9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VMP1Q96GC9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.03■□□□□ 0.64
VMP1Q96GC9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 SMG8-203ENST00000578922 2178 ntBASIC19.02■□□□□ 0.64
VMP1Q96GC9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 AC097658.1-201ENST00000475555 843 ntBASIC19.02■□□□□ 0.64
VMP1Q96GC9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VMP1Q96GC9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 AC105020.6-201ENST00000621523 1217 ntBASIC19.02■□□□□ 0.64
VMP1Q96GC9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.02■□□□□ 0.64
VMP1Q96GC9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VMP1Q96GC9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VMP1Q96GC9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
VMP1Q96GC9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VMP1Q96GC9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19■□□□□ 0.63
VMP1Q96GC9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VMP1Q96GC9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VMP1Q96GC9 OR2A1-AS1-201ENST00000462305 773 ntBASIC19■□□□□ 0.63
VMP1Q96GC9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19■□□□□ 0.63
VMP1Q96GC9 HES2-205ENST00000487437 968 ntTSL 3 BASIC19■□□□□ 0.63
VMP1Q96GC9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19■□□□□ 0.63
VMP1Q96GC9 KRT18P6-201ENST00000555540 1265 ntBASIC19■□□□□ 0.63
VMP1Q96GC9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19■□□□□ 0.63
VMP1Q96GC9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19■□□□□ 0.63
VMP1Q96GC9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19■□□□□ 0.63
VMP1Q96GC9 MYC-209ENST00000641252 345 ntBASIC19■□□□□ 0.63
VMP1Q96GC9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19■□□□□ 0.63
VMP1Q96GC9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19■□□□□ 0.63
VMP1Q96GC9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VMP1Q96GC9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19■□□□□ 0.63
VMP1Q96GC9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VMP1Q96GC9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms