Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 AC125437.2-201ENST00000625180 2167 ntBASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 GCSHP5-201ENST00000443090 522 ntBASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 AP001271.2-201ENST00000624018 1556 ntBASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.36■□□□□ 0.85
SHROOM3Q8TF72 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 PHGDH-210ENST00000641115 1638 ntBASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 AC023632.3-201ENST00000521633 145 ntBASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.35■□□□□ 0.85
SHROOM3Q8TF72 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 AL158047.1-201ENST00000445918 881 ntBASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.34■□□□□ 0.85
SHROOM3Q8TF72 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHROOM3Q8TF72 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHROOM3Q8TF72 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SHROOM3Q8TF72 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHROOM3Q8TF72 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 AC008403.3-201ENST00000598924 454 ntBASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHROOM3Q8TF72 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 AL121906.2-201ENST00000621597 723 ntBASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms