Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MLEC-203ENST00000535413 617 ntTSL 212.57□□□□□ -0.44e-7■■□□□ 13.2
DDX55Q8NHQ9 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.122e-10■■□□□ 13.2
DDX55Q8NHQ9 RIPOR3-204ENST00000462842 1086 ntTSL 220.96■□□□□ 0.955e-6■■□□□ 13.2
DDX55Q8NHQ9 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -05e-6■■□□□ 13.2
DDX55Q8NHQ9 RIPOR3-201ENST00000045083 4279 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.345e-6■■□□□ 13.2
DDX55Q8NHQ9 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.55■□□□□ 0.242e-11■■□□□ 13.2
DDX55Q8NHQ9 PFDN5-208ENST00000549995 598 ntTSL 314.4□□□□□ -0.12e-11■■□□□ 13.2
DDX55Q8NHQ9 PFDN5-215ENST00000551223 478 ntTSL 411.45□□□□□ -0.582e-11■■□□□ 13.2
DDX55Q8NHQ9 PFDN5-209ENST00000550069 599 ntTSL 26.37□□□□□ -1.392e-11■■□□□ 13.2
DDX55Q8NHQ9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.435e-10■■□□□ 13.2
DDX55Q8NHQ9 CDC34-205ENST00000606065 1062 ntTSL 527.56■■■□□ 25e-10■■□□□ 13.2
DDX55Q8NHQ9 CDC34-206ENST00000606400 899 ntTSL 222.3■■□□□ 1.165e-10■■□□□ 13.2
DDX55Q8NHQ9 CDC34-202ENST00000586283 1147 ntTSL 321.78■■□□□ 1.085e-10■■□□□ 13.2
DDX55Q8NHQ9 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.15e-10■■□□□ 13.2
DDX55Q8NHQ9 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.125e-10■■□□□ 13.2
DDX55Q8NHQ9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC34.09■■■■□ 3.052e-6■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-202ENST00000412343 778 ntTSL 326.61■■□□□ 1.855e-9■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-206ENST00000467690 931 ntTSL 224.84■■□□□ 1.575e-9■■□□□ 13.2
DDX55Q8NHQ9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.352e-6■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.815e-9■■□□□ 13.2
DDX55Q8NHQ9 ILK-207ENST00000526711 1594 ntTSL 220.04■□□□□ 0.82e-6■■□□□ 13.2
DDX55Q8NHQ9 FLII-216ENST00000577398 926 ntTSL 219.56■□□□□ 0.722e-7■■□□□ 13.2
DDX55Q8NHQ9 FLII-227ENST00000581858 644 ntTSL 519.34■□□□□ 0.692e-7■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-203ENST00000415995 1387 ntTSL 518.96■□□□□ 0.635e-9■■□□□ 13.2
DDX55Q8NHQ9 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.19■□□□□ 0.52e-7■■□□□ 13.2
DDX55Q8NHQ9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.59■□□□□ 0.415e-9■■□□□ 13.2
DDX55Q8NHQ9 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.162e-6■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-205ENST00000463708 739 ntTSL 316■□□□□ 0.155e-9■■□□□ 13.2
DDX55Q8NHQ9 UQCRC1-208ENST00000472438 477 ntTSL 215.92■□□□□ 0.145e-9■■□□□ 13.2
DDX55Q8NHQ9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.092e-7■■□□□ 13.2
DDX55Q8NHQ9 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.015e-9■■□□□ 13.2
DDX55Q8NHQ9 ILK-215ENST00000537806 1801 ntTSL 5 BASIC13.33□□□□□ -0.282e-6■■□□□ 13.2
DDX55Q8NHQ9 ILK-210ENST00000528995 1559 ntTSL 2 BASIC12.79□□□□□ -0.362e-6■■□□□ 13.2
DDX55Q8NHQ9 ILK-206ENST00000526318 596 ntTSL 312.2□□□□□ -0.462e-6■■□□□ 13.2
DDX55Q8NHQ9 ILK-202ENST00000396751 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.542e-6■■□□□ 13.2
DDX55Q8NHQ9 FLII-220ENST00000578101 4148 ntTSL 211.66□□□□□ -0.542e-7■■□□□ 13.2
DDX55Q8NHQ9 FLII-222ENST00000579294 3936 ntTSL 1 (best) BASIC11.5□□□□□ -0.572e-7■■□□□ 13.2
DDX55Q8NHQ9 FLII-215ENST00000545457 3975 ntTSL 2 BASIC10.85□□□□□ -0.672e-7■■□□□ 13.2
DDX55Q8NHQ9 PAXX-203ENST00000467845 744 ntTSL 220.64■□□□□ 0.899e-7■■□□□ 13.2
DDX55Q8NHQ9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.55■■□□□ 1.22e-7■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.093e-9■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-202ENST00000464720 1665 ntTSL 1 (best)21.45■■□□□ 1.023e-9■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-208ENST00000486082 994 ntTSL 321.37■■□□□ 1.013e-9■■□□□ 13.2
DDX55Q8NHQ9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.671e-6■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.583e-9■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-207ENST00000478104 986 ntTSL 318.42■□□□□ 0.543e-9■■□□□ 13.2
DDX55Q8NHQ9 NDUFB5-202ENST00000359944 1054 ntTSL 1 (best)18.37■□□□□ 0.535e-10■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.533e-9■■□□□ 13.2
DDX55Q8NHQ9 AGXT-202ENST00000470255 2638 ntTSL 218.04■□□□□ 0.481e-6■■□□□ 13.2
DDX55Q8NHQ9 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.67■□□□□ 0.425e-10■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-206ENST00000471456 2861 ntTSL 214.94□□□□□ -0.023e-9■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-205ENST00000470223 2841 ntTSL 214.92□□□□□ -0.023e-9■■□□□ 13.2
DDX55Q8NHQ9 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.13e-9■■□□□ 13.2
DDX55Q8NHQ9 NDUFB5-201ENST00000259037 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.315e-10■■□□□ 13.2
DDX55Q8NHQ9 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC10.02□□□□□ -0.815e-10■■□□□ 13.2
DDX55Q8NHQ9 TMEM222-209ENST00000498220 679 ntTSL 39.69□□□□□ -0.863e-9■■□□□ 13.2
DDX55Q8NHQ9 NDUFB5-204ENST00000471112 684 ntTSL 36.95□□□□□ -1.35e-10■■□□□ 13.2
DDX55Q8NHQ9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.28□□□□□ -1.723e-9■■□□□ 13.2
DDX55Q8NHQ9 SEC23A-207ENST00000554615 3813 ntTSL 1 (best)3.67□□□□□ -1.823e-9■■□□□ 13.2
DDX55Q8NHQ9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.758e-16■■□□□ 13.2
DDX55Q8NHQ9 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.17■□□□□ 0.668e-16■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.63e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.453e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.353e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.683e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.33e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.05■□□□□ 0.83e-38■■□□□ 13.2
DDX55Q8NHQ9 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.743e-38■■□□□ 13.2
DDX55Q8NHQ9 FXYD1-210ENST00000592818 959 ntTSL 522.2■■□□□ 1.145e-8■■□□□ 13.2
DDX55Q8NHQ9 AC020907.2-201ENST00000586871 588 ntTSL 413.27□□□□□ -0.295e-8■■□□□ 13.2
DDX55Q8NHQ9 AC020907.2-202ENST00000592174 728 ntTSL 3 BASIC10.87□□□□□ -0.675e-8■■□□□ 13.2
DDX55Q8NHQ9 FXYD1-201ENST00000351325 592 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.675e-8■■□□□ 13.2
DDX55Q8NHQ9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.023e-22■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-210ENST00000479818 1916 ntTSL 1 (best)19.88■□□□□ 0.772e-6■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.032e-6■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.022e-6■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-209ENST00000479701 3504 ntTSL 214.12□□□□□ -0.152e-6■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-208ENST00000463165 3038 ntTSL 213.57□□□□□ -0.242e-6■■□□□ 13.1
DDX55Q8NHQ9 PLXNB2-213ENST00000610984 3443 ntTSL 5 BASIC11.51□□□□□ -0.572e-6■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-225ENST00000497666 479 ntTSL 319.61■□□□□ 0.731e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.261e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-221ENST00000491465 2444 ntTSL 1 (best)15.33■□□□□ 0.041e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-218ENST00000466110 5414 ntTSL 214.31□□□□□ -0.121e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-210ENST00000434055 4229 ntTSL 213.49□□□□□ -0.251e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-206ENST00000409868 4202 ntTSL 5 BASIC12.78□□□□□ -0.361e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-201ENST00000361874 4500 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.491e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-227ENST00000633691 4160 ntTSL 5 BASIC11.95□□□□□ -0.51e-14■■□□□ 13.1
DDX55Q8NHQ9 AC006030.1-201ENST00000451608 5059 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.51e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-202ENST00000394003 4479 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.581e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-204ENST00000409438 4145 ntTSL 1 (best) BASIC11.29□□□□□ -0.61e-14■■□□□ 13.1
DDX55Q8NHQ9 DCTN1-226ENST00000628224 4485 ntTSL 5 BASIC11.14□□□□□ -0.631e-14■■□□□ 13.1
DDX55Q8NHQ9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.32■□□□□ 0.845e-7■■□□□ 13.1
DDX55Q8NHQ9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.1■□□□□ 0.495e-7■■□□□ 13.1
DDX55Q8NHQ9 MED15-222ENST00000473244 2733 ntTSL 1 (best)20.35■□□□□ 0.851e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-231ENST00000493216 4701 ntTSL 218.44■□□□□ 0.541e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.161e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.57■□□□□ 0.081e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.21■□□□□ 0.031e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-211ENST00000433831 3267 ntTSL 514.81□□□□□ -0.041e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.211e-8■■□□□ 13.1
Retrieved 100 of 15,504 protein–RNA pairs in 202.6 ms