Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AL390955.1-201ENST00000428694 934 ntBASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AC116562.2-201ENST00000507042 360 ntBASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AL121603.2-201ENST00000557373 2117 ntBASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
NPAS3Q8IXF0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.7■□□□□ 0.91
NPAS3Q8IXF0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 KRT16P1-201ENST00000399124 1418 ntBASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 AC005521.1-201ENST00000393351 872 ntBASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 LINC01568-207ENST00000641790 1380 ntBASIC20.7■□□□□ 0.9
NPAS3Q8IXF0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 FITM1-202ENST00000559294 800 ntBASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 CYP2D8P-201ENST00000433633 1490 ntBASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.69■□□□□ 0.9
NPAS3Q8IXF0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 AC113347.1-201ENST00000413321 391 ntBASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 AL049597.2-201ENST00000565575 961 ntBASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS3Q8IXF0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 NAPSB-206ENST00000562112 1266 ntBASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 AC010947.1-201ENST00000623454 693 ntBASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 KRT8P17-201ENST00000453110 1448 ntBASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms