Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 SNORA78-201ENST00000459373 127 ntBASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 MIR4497-201ENST00000583208 89 ntBASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 KRT16P6-202ENST00000425692 1426 ntBASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC60Q8IWA6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC60Q8IWA6 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 RARRES2P10-201ENST00000564312 460 ntBASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CCDC60Q8IWA6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 AP005212.1-201ENST00000581547 1997 ntBASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC60Q8IWA6 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 AC116351.2-201ENST00000606540 1585 ntBASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 KRT16P5-201ENST00000455284 522 ntBASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC60Q8IWA6 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 AL049637.2-201ENST00000641778 930 ntBASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC60Q8IWA6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms