Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.52■□□□□ 0.72
VRK3Q8IV63 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.52■□□□□ 0.72
VRK3Q8IV63 AL390719.1-204ENST00000412397 1219 ntBASIC19.52■□□□□ 0.72
VRK3Q8IV63 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.52■□□□□ 0.72
VRK3Q8IV63 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.52■□□□□ 0.72
VRK3Q8IV63 AC124283.5-201ENST00000624661 1809 ntBASIC19.52■□□□□ 0.72
VRK3Q8IV63 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
VRK3Q8IV63 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VRK3Q8IV63 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VRK3Q8IV63 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 AFG3L1P-217ENST00000557444 2447 ntBASIC19.51■□□□□ 0.71
VRK3Q8IV63 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.51■□□□□ 0.71
VRK3Q8IV63 UNC93B5-201ENST00000530315 699 ntBASIC19.51■□□□□ 0.71
VRK3Q8IV63 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 SOX15-203ENST00000570788 1093 ntBASIC19.51■□□□□ 0.71
VRK3Q8IV63 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.51■□□□□ 0.71
VRK3Q8IV63 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VRK3Q8IV63 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.5■□□□□ 0.71
VRK3Q8IV63 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.5■□□□□ 0.71
VRK3Q8IV63 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VRK3Q8IV63 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.49■□□□□ 0.71
VRK3Q8IV63 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VRK3Q8IV63 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 SLC25A24-204ENST00000569674 2357 ntBASIC19.48■□□□□ 0.71
VRK3Q8IV63 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.48■□□□□ 0.71
VRK3Q8IV63 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VRK3Q8IV63 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms