Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 AF213884.3-201ENST00000563833 479 ntBASIC17.76■□□□□ 0.43
CCDC58Q4VC31 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC58Q4VC31 AC007613.1-201ENST00000572811 2597 ntBASIC17.76■□□□□ 0.43
CCDC58Q4VC31 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L2-201ENST00000561772 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 FAM21FP-204ENST00000608637 956 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L6-201ENST00000626483 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L1-201ENST00000627662 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L8-201ENST00000629013 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L3-201ENST00000630187 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L7-201ENST00000630678 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 DUX4L5-201ENST00000630834 1275 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 AC005332.7-201ENST00000614046 2005 ntBASIC17.75■□□□□ 0.43
CCDC58Q4VC31 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC58Q4VC31 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AC243732.1-201ENST00000612648 864 ntBASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AL136967.2-201ENST00000623968 743 ntBASIC17.74■□□□□ 0.43
CCDC58Q4VC31 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC58Q4VC31 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCDC58Q4VC31 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms