Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 TPM4P1-201ENST00000436100 807 ntBASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 AC023632.3-201ENST00000521633 145 ntBASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC88AQ3V6T2 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC117947.1-201ENST00000427448 529 ntBASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC011484.1-201ENST00000377652 1995 ntBASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 LINC01238-205ENST00000567549 1107 ntBASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AC116407.4-201ENST00000623319 1061 ntBASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 AL049796.1-201ENST00000565336 1766 ntBASIC24.53■■□□□ 1.52
CCDC88AQ3V6T2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 LGALS8-AS1-201ENST00000487567 1457 ntBASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 AP000550.4-202ENST00000639755 178 ntBASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC88AQ3V6T2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 ATP5G1P1-201ENST00000448724 379 ntBASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 AC128688.1-201ENST00000487626 519 ntBASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 C1QL1P1-201ENST00000568105 661 ntBASIC24.51■■□□□ 1.51
CCDC88AQ3V6T2 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC88AQ3V6T2 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms