Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
PRKDCP78527 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.55□□□□□ -0.08
PRKDCP78527 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.55□□□□□ -0.08
PRKDCP78527 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
PRKDCP78527 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PRKDCP78527 AC004980.1-204ENST00000429707 299 ntBASIC14.54□□□□□ -0.08
PRKDCP78527 AP000692.2-201ENST00000608391 879 ntBASIC14.54□□□□□ -0.08
PRKDCP78527 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.54□□□□□ -0.08
PRKDCP78527 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.54□□□□□ -0.08
PRKDCP78527 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC14.54□□□□□ -0.08
PRKDCP78527 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.54□□□□□ -0.08
PRKDCP78527 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
PRKDCP78527 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
PRKDCP78527 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.54□□□□□ -0.08
PRKDCP78527 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.54□□□□□ -0.08
PRKDCP78527 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.54□□□□□ -0.08
PRKDCP78527 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
PRKDCP78527 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PRKDCP78527 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
PRKDCP78527 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.53□□□□□ -0.08
PRKDCP78527 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.53□□□□□ -0.08
PRKDCP78527 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC14.53□□□□□ -0.08
PRKDCP78527 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.53□□□□□ -0.08
PRKDCP78527 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
PRKDCP78527 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.53□□□□□ -0.08
PRKDCP78527 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PRKDCP78527 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.53□□□□□ -0.08
PRKDCP78527 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
PRKDCP78527 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC14.52□□□□□ -0.08
PRKDCP78527 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
PRKDCP78527 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PRKDCP78527 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.52□□□□□ -0.08
PRKDCP78527 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PRKDCP78527 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.52□□□□□ -0.08
PRKDCP78527 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PRKDCP78527 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PRKDCP78527 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 PRSS44-201ENST00000515154 1146 ntBASIC14.52□□□□□ -0.09
PRKDCP78527 PRELID1P1-202ENST00000567272 903 ntBASIC14.52□□□□□ -0.09
PRKDCP78527 C1QL1P1-201ENST00000568105 661 ntBASIC14.52□□□□□ -0.09
PRKDCP78527 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.52□□□□□ -0.09
PRKDCP78527 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 KRT8P36-201ENST00000489121 1440 ntBASIC14.52□□□□□ -0.09
PRKDCP78527 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PRKDCP78527 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.51□□□□□ -0.09
PRKDCP78527 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PRKDCP78527 CCR12P-201ENST00000446203 998 ntBASIC14.51□□□□□ -0.09
PRKDCP78527 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC14.51□□□□□ -0.09
PRKDCP78527 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.51□□□□□ -0.09
PRKDCP78527 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.51□□□□□ -0.09
PRKDCP78527 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.51□□□□□ -0.09
PRKDCP78527 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.51□□□□□ -0.09
PRKDCP78527 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.51□□□□□ -0.09
PRKDCP78527 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.51□□□□□ -0.09
PRKDCP78527 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PRKDCP78527 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.51□□□□□ -0.09
PRKDCP78527 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.51□□□□□ -0.09
PRKDCP78527 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC14.51□□□□□ -0.09
PRKDCP78527 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms