Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM3P62310 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.95■□□□□ 0.46
LSM3P62310 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 TSPY9P-201ENST00000440215 945 ntBASIC17.95■□□□□ 0.46
LSM3P62310 TSPY11P-201ENST00000442607 1045 ntBASIC17.95■□□□□ 0.46
LSM3P62310 KRT125P-201ENST00000546827 989 ntBASIC17.95■□□□□ 0.46
LSM3P62310 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.95■□□□□ 0.46
LSM3P62310 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM3P62310 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM3P62310 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM3P62310 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM3P62310 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM3P62310 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.95■□□□□ 0.46
LSM3P62310 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LSM3P62310 AL032819.2-201ENST00000624543 2162 ntBASIC17.94■□□□□ 0.46
LSM3P62310 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.94■□□□□ 0.46
LSM3P62310 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LSM3P62310 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.94■□□□□ 0.46
LSM3P62310 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.94■□□□□ 0.46
LSM3P62310 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.94■□□□□ 0.46
LSM3P62310 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LSM3P62310 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM3P62310 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LSM3P62310 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LSM3P62310 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.93■□□□□ 0.46
LSM3P62310 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
LSM3P62310 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
LSM3P62310 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.93■□□□□ 0.46
LSM3P62310 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
LSM3P62310 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LSM3P62310 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM3P62310 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.93■□□□□ 0.46
LSM3P62310 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.92■□□□□ 0.46
LSM3P62310 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LSM3P62310 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LSM3P62310 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.92■□□□□ 0.46
LSM3P62310 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM3P62310 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.92■□□□□ 0.46
LSM3P62310 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LSM3P62310 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
LSM3P62310 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM3P62310 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.92■□□□□ 0.46
LSM3P62310 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM3P62310 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM3P62310 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM3P62310 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LSM3P62310 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM3P62310 AC009113.1-201ENST00000570267 2443 ntBASIC17.91■□□□□ 0.46
LSM3P62310 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM3P62310 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM3P62310 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.91■□□□□ 0.46
LSM3P62310 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM3P62310 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LSM3P62310 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms