Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.54■□□□□ 0.88
NEK3P51956 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NEK3P51956 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.53■□□□□ 0.88
NEK3P51956 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.53■□□□□ 0.88
NEK3P51956 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.53■□□□□ 0.88
NEK3P51956 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
NEK3P51956 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.53■□□□□ 0.88
NEK3P51956 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NEK3P51956 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.53■□□□□ 0.88
NEK3P51956 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.53■□□□□ 0.88
NEK3P51956 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.53■□□□□ 0.88
NEK3P51956 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.53■□□□□ 0.88
NEK3P51956 HLA-B-256ENST00000639848 1089 ntBASIC20.53■□□□□ 0.88
NEK3P51956 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
NEK3P51956 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.53■□□□□ 0.88
NEK3P51956 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEK3P51956 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.53■□□□□ 0.88
NEK3P51956 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.52■□□□□ 0.88
NEK3P51956 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
NEK3P51956 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NEK3P51956 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NEK3P51956 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.52■□□□□ 0.88
NEK3P51956 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.52■□□□□ 0.88
NEK3P51956 AC060766.5-201ENST00000590539 871 ntBASIC20.52■□□□□ 0.88
NEK3P51956 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.52■□□□□ 0.88
NEK3P51956 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEK3P51956 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
NEK3P51956 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.52■□□□□ 0.87
NEK3P51956 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.52■□□□□ 0.87
NEK3P51956 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NEK3P51956 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.51■□□□□ 0.87
NEK3P51956 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.51■□□□□ 0.87
NEK3P51956 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 ESRRAP1-201ENST00000400596 1257 ntBASIC20.51■□□□□ 0.87
NEK3P51956 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.51■□□□□ 0.87
NEK3P51956 UNC93B5-201ENST00000530315 699 ntBASIC20.51■□□□□ 0.87
NEK3P51956 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 AL356652.1-201ENST00000615962 565 ntBASIC20.51■□□□□ 0.87
NEK3P51956 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.51■□□□□ 0.87
NEK3P51956 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NEK3P51956 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEK3P51956 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.51■□□□□ 0.87
NEK3P51956 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NEK3P51956 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.5■□□□□ 0.87
NEK3P51956 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.5■□□□□ 0.87
NEK3P51956 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.5■□□□□ 0.87
NEK3P51956 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 TCF3P1-201ENST00000423021 1937 ntBASIC20.5■□□□□ 0.87
NEK3P51956 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.5■□□□□ 0.87
NEK3P51956 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEK3P51956 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.5■□□□□ 0.87
NEK3P51956 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NEK3P51956 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.49■□□□□ 0.87
NEK3P51956 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
NEK3P51956 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.49■□□□□ 0.87
NEK3P51956 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.49■□□□□ 0.87
NEK3P51956 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
NEK3P51956 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.49■□□□□ 0.87
NEK3P51956 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.49■□□□□ 0.87
NEK3P51956 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 C2orf69P4-201ENST00000565394 541 ntBASIC20.49■□□□□ 0.87
NEK3P51956 ITM2C-210ENST00000620962 501 ntBASIC20.49■□□□□ 0.87
NEK3P51956 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms