Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR572-201ENST00000384983 95 ntBASIC18.99■□□□□ 0.63
MSX2P35548 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
MSX2P35548 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX2P35548 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.99■□□□□ 0.63
MSX2P35548 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX2P35548 LETM1P2-201ENST00000597330 2178 ntBASIC18.99■□□□□ 0.63
MSX2P35548 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX2P35548 KRT16P2-201ENST00000414673 1423 ntBASIC18.99■□□□□ 0.63
MSX2P35548 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.99■□□□□ 0.63
MSX2P35548 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.99■□□□□ 0.63
MSX2P35548 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
MSX2P35548 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
MSX2P35548 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 AC005082.1-201ENST00000413042 2259 ntBASIC18.98■□□□□ 0.63
MSX2P35548 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX2P35548 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX2P35548 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX2P35548 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 AC135279.3-201ENST00000610945 1311 ntBASIC18.98■□□□□ 0.63
MSX2P35548 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX2P35548 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.97■□□□□ 0.63
MSX2P35548 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
MSX2P35548 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
MSX2P35548 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MSX2P35548 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.97■□□□□ 0.63
MSX2P35548 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.97■□□□□ 0.63
MSX2P35548 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MSX2P35548 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX2P35548 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX2P35548 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
MSX2P35548 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.96■□□□□ 0.63
MSX2P35548 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.96■□□□□ 0.63
MSX2P35548 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
MSX2P35548 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.96■□□□□ 0.63
MSX2P35548 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.96■□□□□ 0.63
MSX2P35548 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX2P35548 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.96■□□□□ 0.63
MSX2P35548 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.96■□□□□ 0.63
MSX2P35548 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.95■□□□□ 0.62
MSX2P35548 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MSX2P35548 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MSX2P35548 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
MSX2P35548 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
MSX2P35548 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 TPRG1LP1-201ENST00000598702 760 ntBASIC18.95■□□□□ 0.62
MSX2P35548 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MSX2P35548 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
MSX2P35548 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX2P35548 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.94■□□□□ 0.62
MSX2P35548 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms