Protein–RNA interactions for Protein: P18031

PTPN1, Tyrosine-protein phosphatase non-receptor type 1, humanhuman

Known RBP Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1P18031 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PTPN1P18031 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PTPN1P18031 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN1P18031 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
PTPN1P18031 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 BX119927.1-201ENST00000636596 1552 ntBASIC21.12■□□□□ 0.97
PTPN1P18031 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.12■□□□□ 0.97
PTPN1P18031 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.12■□□□□ 0.97
PTPN1P18031 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.12■□□□□ 0.97
PTPN1P18031 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
PTPN1P18031 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.12■□□□□ 0.97
PTPN1P18031 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
PTPN1P18031 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.12■□□□□ 0.97
PTPN1P18031 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
PTPN1P18031 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN1P18031 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
PTPN1P18031 LINC01006-201ENST00000333319 2292 ntBASIC21.11■□□□□ 0.97
PTPN1P18031 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.11■□□□□ 0.97
PTPN1P18031 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.11■□□□□ 0.97
PTPN1P18031 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.11■□□□□ 0.97
PTPN1P18031 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.11■□□□□ 0.97
PTPN1P18031 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 AL121906.2-201ENST00000621597 723 ntBASIC21.11■□□□□ 0.97
PTPN1P18031 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN1P18031 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.11■□□□□ 0.97
PTPN1P18031 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN1P18031 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
PTPN1P18031 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
PTPN1P18031 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.1■□□□□ 0.97
PTPN1P18031 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN1P18031 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 PRKY-204ENST00000533551 1019 ntBASIC21.1■□□□□ 0.97
PTPN1P18031 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN1P18031 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN1P18031 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN1P18031 AC124016.1-201ENST00000609552 612 ntBASIC21.1■□□□□ 0.97
PTPN1P18031 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN1P18031 FAM197Y4-202ENST00000622692 608 ntBASIC21.1■□□□□ 0.97
PTPN1P18031 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.1■□□□□ 0.97
PTPN1P18031 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.1■□□□□ 0.97
PTPN1P18031 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN1P18031 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.1■□□□□ 0.97
PTPN1P18031 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN1P18031 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 AC239809.2-201ENST00000415381 517 ntBASIC21.09■□□□□ 0.97
PTPN1P18031 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.09■□□□□ 0.97
PTPN1P18031 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 AC066615.1-201ENST00000640911 628 ntBASIC21.09■□□□□ 0.97
PTPN1P18031 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PTPN1P18031 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN1P18031 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PTPN1P18031 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms