Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 KRT8P17-201ENST00000453110 1448 ntBASIC20.24■□□□□ 0.83
COL4A2P08572 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A2P08572 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A2P08572 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A2P08572 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A2P08572 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
COL4A2P08572 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL4A2P08572 TSPY14P-201ENST00000303979 915 ntBASIC20.23■□□□□ 0.83
COL4A2P08572 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL4A2P08572 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.23■□□□□ 0.83
COL4A2P08572 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A2P08572 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A2P08572 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A2P08572 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A2P08572 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 AL137013.1-201ENST00000432946 1228 ntBASIC20.22■□□□□ 0.83
COL4A2P08572 KRT18P16-201ENST00000510337 1294 ntBASIC20.22■□□□□ 0.83
COL4A2P08572 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
COL4A2P08572 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
COL4A2P08572 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A2P08572 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL4A2P08572 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 AC116351.2-201ENST00000606540 1585 ntBASIC20.22■□□□□ 0.83
COL4A2P08572 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
COL4A2P08572 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A2P08572 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A2P08572 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A2P08572 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.22■□□□□ 0.83
COL4A2P08572 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A2P08572 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A2P08572 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 AC005229.4-201ENST00000610085 2198 ntBASIC20.21■□□□□ 0.83
COL4A2P08572 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL4A2P08572 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A2P08572 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A2P08572 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A2P08572 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A2P08572 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A2P08572 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A2P08572 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.2■□□□□ 0.83
COL4A2P08572 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 AC121338.2-201ENST00000622535 1744 ntBASIC20.2■□□□□ 0.82
COL4A2P08572 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 INGX-201ENST00000359239 846 ntBASIC20.2■□□□□ 0.82
COL4A2P08572 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A2P08572 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A2P08572 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A2P08572 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.2■□□□□ 0.82
COL4A2P08572 AP006587.1-201ENST00000534129 1502 ntBASIC20.2■□□□□ 0.82
COL4A2P08572 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A2P08572 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms