Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CLDN3O15551 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.8■■□□□ 1.08
CLDN3O15551 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.8■■□□□ 1.08
CLDN3O15551 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 RPS2P52-201ENST00000469610 820 ntBASIC21.8■■□□□ 1.08
CLDN3O15551 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CLDN3O15551 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.8■■□□□ 1.08
CLDN3O15551 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.8■■□□□ 1.08
CLDN3O15551 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 AL512408.1-201ENST00000569378 2000 ntBASIC21.8■■□□□ 1.08
CLDN3O15551 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.8■■□□□ 1.08
CLDN3O15551 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CLDN3O15551 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLDN3O15551 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.79■■□□□ 1.08
CLDN3O15551 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CLDN3O15551 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.79■■□□□ 1.08
CLDN3O15551 PRORSD1P-201ENST00000295112 541 ntBASIC21.79■■□□□ 1.08
CLDN3O15551 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.79■■□□□ 1.08
CLDN3O15551 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.79■■□□□ 1.08
CLDN3O15551 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.79■■□□□ 1.08
CLDN3O15551 AC069544.1-201ENST00000609399 999 ntBASIC21.79■■□□□ 1.08
CLDN3O15551 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.79■■□□□ 1.08
CLDN3O15551 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CLDN3O15551 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.79■■□□□ 1.08
CLDN3O15551 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 KRT16P6-202ENST00000425692 1426 ntBASIC21.79■■□□□ 1.08
CLDN3O15551 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CLDN3O15551 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLDN3O15551 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.79■■□□□ 1.08
CLDN3O15551 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
CLDN3O15551 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.78■■□□□ 1.08
CLDN3O15551 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
CLDN3O15551 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.78■■□□□ 1.08
CLDN3O15551 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CLDN3O15551 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.78■■□□□ 1.08
CLDN3O15551 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.78■■□□□ 1.08
CLDN3O15551 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.78■■□□□ 1.08
CLDN3O15551 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
CLDN3O15551 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.78■■□□□ 1.08
CLDN3O15551 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.78■■□□□ 1.08
CLDN3O15551 AC233263.1-201ENST00000578059 224 ntBASIC21.78■■□□□ 1.08
CLDN3O15551 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.78■■□□□ 1.08
CLDN3O15551 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CLDN3O15551 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.78■■□□□ 1.08
CLDN3O15551 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLDN3O15551 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.77■■□□□ 1.08
CLDN3O15551 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CLDN3O15551 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.77■■□□□ 1.08
CLDN3O15551 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CLDN3O15551 AC124283.5-201ENST00000624661 1809 ntBASIC21.77■■□□□ 1.08
CLDN3O15551 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLDN3O15551 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CLDN3O15551 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CLDN3O15551 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.76■■□□□ 1.07
CLDN3O15551 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
CLDN3O15551 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.76■■□□□ 1.07
CLDN3O15551 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.76■■□□□ 1.07
CLDN3O15551 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLDN3O15551 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CLDN3O15551 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CLDN3O15551 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms