Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CPSF4LA6NMK7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 RARRES2P4-201ENST00000514074 484 ntBASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 DUX4L16-201ENST00000555130 1264 ntBASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPSF4LA6NMK7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 MCRIP2P1-201ENST00000394346 511 ntBASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 CNN2P6-201ENST00000439038 900 ntBASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 AC068338.2-201ENST00000563278 1430 ntBASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CPSF4LA6NMK7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPSF4LA6NMK7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 RARRES2P6-201ENST00000567333 442 ntBASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms