Protein–RNA interactions for Protein: Q9BWW4

SSBP3, Single-stranded DNA-binding protein 3, humanhuman

Predicted RBP Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3Q9BWW4 HLA-V-202ENST00000446817 847 ntBASIC21.59■■□□□ 1.05
SSBP3Q9BWW4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.59■■□□□ 1.05
SSBP3Q9BWW4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.59■■□□□ 1.05
SSBP3Q9BWW4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SSBP3Q9BWW4 DUX4L11-201ENST00000611504 1267 ntBASIC21.58■■□□□ 1.05
SSBP3Q9BWW4 DUX4L12-201ENST00000614593 1267 ntBASIC21.58■■□□□ 1.05
SSBP3Q9BWW4 DUX4L14-201ENST00000621227 1267 ntBASIC21.58■■□□□ 1.05
SSBP3Q9BWW4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SSBP3Q9BWW4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SSBP3Q9BWW4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SSBP3Q9BWW4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SSBP3Q9BWW4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.56■■□□□ 1.04
SSBP3Q9BWW4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.56■■□□□ 1.04
SSBP3Q9BWW4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.56■■□□□ 1.04
SSBP3Q9BWW4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.56■■□□□ 1.04
SSBP3Q9BWW4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.56■■□□□ 1.04
SSBP3Q9BWW4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SSBP3Q9BWW4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.55■■□□□ 1.04
SSBP3Q9BWW4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.55■■□□□ 1.04
SSBP3Q9BWW4 AC127502.1-201ENST00000399971 1502 ntBASIC21.55■■□□□ 1.04
SSBP3Q9BWW4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SSBP3Q9BWW4 LINC00273-201ENST00000539813 1452 ntBASIC21.54■■□□□ 1.04
SSBP3Q9BWW4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.54■■□□□ 1.04
SSBP3Q9BWW4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.54■■□□□ 1.04
SSBP3Q9BWW4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.54■■□□□ 1.04
SSBP3Q9BWW4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSBP3Q9BWW4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.53■■□□□ 1.04
SSBP3Q9BWW4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.53■■□□□ 1.04
SSBP3Q9BWW4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSBP3Q9BWW4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.52■■□□□ 1.04
SSBP3Q9BWW4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSBP3Q9BWW4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.52■■□□□ 1.04
SSBP3Q9BWW4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.52■■□□□ 1.04
SSBP3Q9BWW4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.52■■□□□ 1.03
SSBP3Q9BWW4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SSBP3Q9BWW4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.5■■□□□ 1.03
SSBP3Q9BWW4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.5■■□□□ 1.03
SSBP3Q9BWW4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SSBP3Q9BWW4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 MIR3648-2-201ENST00000581792 180 ntBASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 MIR3648-1-201ENST00000615959 180 ntBASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSBP3Q9BWW4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SSBP3Q9BWW4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SSBP3Q9BWW4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
SSBP3Q9BWW4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SSBP3Q9BWW4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SSBP3Q9BWW4 ST7-AS1-201ENST00000456775 1889 ntBASIC21.47■■□□□ 1.03
SSBP3Q9BWW4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SSBP3Q9BWW4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SSBP3Q9BWW4 AC016575.1-201ENST00000607026 382 ntBASIC21.47■■□□□ 1.03
SSBP3Q9BWW4 CR559946.2-201ENST00000623684 991 ntBASIC21.47■■□□□ 1.03
SSBP3Q9BWW4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L13-201ENST00000554103 1267 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L15-201ENST00000611059 1267 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L23-201ENST00000615195 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L24-201ENST00000617576 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L22-201ENST00000618238 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L20-201ENST00000619712 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L21-201ENST00000622058 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L10-201ENST00000622460 1267 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 DUX4L25-201ENST00000624915 1269 ntBASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.46■■□□□ 1.03
SSBP3Q9BWW4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SSBP3Q9BWW4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SSBP3Q9BWW4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SSBP3Q9BWW4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SSBP3Q9BWW4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSBP3Q9BWW4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SSBP3Q9BWW4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSBP3Q9BWW4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SSBP3Q9BWW4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 MIR639-201ENST00000384974 98 ntBASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSBP3Q9BWW4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSBP3Q9BWW4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSBP3Q9BWW4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSBP3Q9BWW4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SSBP3Q9BWW4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSBP3Q9BWW4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.4■■□□□ 1.02
SSBP3Q9BWW4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSBP3Q9BWW4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SSBP3Q9BWW4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.39■■□□□ 1.01
SSBP3Q9BWW4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SSBP3Q9BWW4 AC135983.2-203ENST00000454486 1613 ntBASIC21.39■■□□□ 1.01
SSBP3Q9BWW4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SSBP3Q9BWW4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms