Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CSMD3Q7Z407 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.5■□□□□ 0.55
CSMD3Q7Z407 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC18.5■□□□□ 0.55
CSMD3Q7Z407 AL033527.3-201ENST00000566366 1196 ntBASIC18.5■□□□□ 0.55
CSMD3Q7Z407 AC012354.3-201ENST00000623734 483 ntBASIC18.48■□□□□ 0.55
CSMD3Q7Z407 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CSMD3Q7Z407 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CSMD3Q7Z407 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CSMD3Q7Z407 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CSMD3Q7Z407 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.46■□□□□ 0.55
CSMD3Q7Z407 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.45■□□□□ 0.54
CSMD3Q7Z407 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CSMD3Q7Z407 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CSMD3Q7Z407 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.44■□□□□ 0.54
CSMD3Q7Z407 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CSMD3Q7Z407 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.43■□□□□ 0.54
CSMD3Q7Z407 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CSMD3Q7Z407 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18.43■□□□□ 0.54
CSMD3Q7Z407 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CSMD3Q7Z407 LINC00273-201ENST00000539813 1452 ntBASIC18.42■□□□□ 0.54
CSMD3Q7Z407 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CSMD3Q7Z407 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CSMD3Q7Z407 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.41■□□□□ 0.54
CSMD3Q7Z407 AC018358.1-201ENST00000631079 1402 ntBASIC18.41■□□□□ 0.54
CSMD3Q7Z407 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSMD3Q7Z407 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CSMD3Q7Z407 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CSMD3Q7Z407 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSMD3Q7Z407 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.4■□□□□ 0.54
CSMD3Q7Z407 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CSMD3Q7Z407 AC008813.1-201ENST00000536597 885 ntBASIC18.4■□□□□ 0.54
CSMD3Q7Z407 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CSMD3Q7Z407 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC18.39■□□□□ 0.53
CSMD3Q7Z407 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.39■□□□□ 0.53
CSMD3Q7Z407 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CSMD3Q7Z407 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CSMD3Q7Z407 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CSMD3Q7Z407 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSMD3Q7Z407 TSPY13P-201ENST00000338964 914 ntBASIC18.37■□□□□ 0.53
CSMD3Q7Z407 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 AC022413.1-201ENST00000624602 984 ntBASIC18.37■□□□□ 0.53
CSMD3Q7Z407 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CSMD3Q7Z407 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC18.36■□□□□ 0.53
CSMD3Q7Z407 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSMD3Q7Z407 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSMD3Q7Z407 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CSMD3Q7Z407 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.35■□□□□ 0.53
CSMD3Q7Z407 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSMD3Q7Z407 AC060814.1-201ENST00000554326 538 ntBASIC18.33■□□□□ 0.52
CSMD3Q7Z407 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.33■□□□□ 0.52
CSMD3Q7Z407 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CSMD3Q7Z407 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CSMD3Q7Z407 U85056.1-201ENST00000616429 682 ntBASIC18.32■□□□□ 0.52
CSMD3Q7Z407 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC18.31■□□□□ 0.52
CSMD3Q7Z407 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CSMD3Q7Z407 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 RARRES2P1-201ENST00000474487 481 ntBASIC18.29■□□□□ 0.52
CSMD3Q7Z407 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.29■□□□□ 0.52
CSMD3Q7Z407 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CSMD3Q7Z407 KRT18P60-201ENST00000312876 1297 ntBASIC18.28■□□□□ 0.52
CSMD3Q7Z407 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CSMD3Q7Z407 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CSMD3Q7Z407 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CSMD3Q7Z407 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CSMD3Q7Z407 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.26■□□□□ 0.51
CSMD3Q7Z407 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CSMD3Q7Z407 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms