Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
RNF4P78317 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.09■■□□□ 1.45
RNF4P78317 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 MIR7108-201ENST00000614319 87 ntBASIC24.09■■□□□ 1.45
RNF4P78317 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 ABCB10P1-201ENST00000614297 2181 ntBASIC24.08■■□□□ 1.45
RNF4P78317 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.08■■□□□ 1.45
RNF4P78317 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.07■■□□□ 1.44
RNF4P78317 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RNF4P78317 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.06■■□□□ 1.44
RNF4P78317 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.05■■□□□ 1.44
RNF4P78317 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.04■■□□□ 1.44
RNF4P78317 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.04■■□□□ 1.44
RNF4P78317 LINC00273-201ENST00000539813 1452 ntBASIC24.04■■□□□ 1.44
RNF4P78317 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
RNF4P78317 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24■■□□□ 1.43
RNF4P78317 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 LINC01971-201ENST00000617888 1048 ntBASIC24■■□□□ 1.43
RNF4P78317 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24■■□□□ 1.43
RNF4P78317 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.99■■□□□ 1.43
RNF4P78317 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
RNF4P78317 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.98■■□□□ 1.43
RNF4P78317 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.98■■□□□ 1.43
RNF4P78317 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
RNF4P78317 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
RNF4P78317 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
RNF4P78317 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.97■■□□□ 1.43
RNF4P78317 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF4P78317 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF4P78317 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.96■■□□□ 1.43
RNF4P78317 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
RNF4P78317 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
RNF4P78317 DUX4L11-201ENST00000611504 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 DUX4L12-201ENST00000614593 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 DUX4L14-201ENST00000621227 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RNF4P78317 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
RNF4P78317 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
RNF4P78317 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 AC135983.2-203ENST00000454486 1613 ntBASIC23.93■■□□□ 1.42
RNF4P78317 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
RNF4P78317 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
RNF4P78317 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.92■■□□□ 1.42
RNF4P78317 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
RNF4P78317 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF4P78317 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
RNF4P78317 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.9■■□□□ 1.42
RNF4P78317 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.9■■□□□ 1.42
RNF4P78317 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF4P78317 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF4P78317 WHAMMP2-203ENST00000563942 1603 ntBASIC23.89■■□□□ 1.42
RNF4P78317 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF4P78317 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.41
RNF4P78317 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.88■■□□□ 1.41
RNF4P78317 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RNF4P78317 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF4P78317 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF4P78317 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RNF4P78317 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.86■■□□□ 1.41
RNF4P78317 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.86■■□□□ 1.41
RNF4P78317 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RNF4P78317 AL139393.2-201ENST00000608721 2025 ntBASIC23.85■■□□□ 1.41
RNF4P78317 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L13-201ENST00000554103 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L15-201ENST00000611059 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L23-201ENST00000615195 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L24-201ENST00000617576 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L22-201ENST00000618238 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L20-201ENST00000619712 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L21-201ENST00000622058 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L10-201ENST00000622460 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L25-201ENST00000624915 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 AP004833.2-201ENST00000532228 1454 ntBASIC23.85■■□□□ 1.41
RNF4P78317 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 209.7 ms