Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
FOXA1P55317 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.17■■□□□ 1.62
FOXA1P55317 AC097358.2-201ENST00000607541 1159 ntBASIC25.17■■□□□ 1.62
FOXA1P55317 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
FOXA1P55317 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.16■■□□□ 1.62
FOXA1P55317 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
FOXA1P55317 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
FOXA1P55317 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.62
FOXA1P55317 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
FOXA1P55317 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
FOXA1P55317 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.61
FOXA1P55317 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
FOXA1P55317 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.13■■□□□ 1.61
FOXA1P55317 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
FOXA1P55317 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.13■■□□□ 1.61
FOXA1P55317 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
FOXA1P55317 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
FOXA1P55317 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
FOXA1P55317 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
FOXA1P55317 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
FOXA1P55317 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
FOXA1P55317 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
FOXA1P55317 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
FOXA1P55317 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
FOXA1P55317 AC127502.1-201ENST00000399971 1502 ntBASIC25.09■■□□□ 1.61
FOXA1P55317 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
FOXA1P55317 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
FOXA1P55317 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
FOXA1P55317 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
FOXA1P55317 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.07■■□□□ 1.6
FOXA1P55317 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
FOXA1P55317 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
FOXA1P55317 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
FOXA1P55317 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
FOXA1P55317 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
FOXA1P55317 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.06■■□□□ 1.6
FOXA1P55317 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.05■■□□□ 1.6
FOXA1P55317 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
FOXA1P55317 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.05■■□□□ 1.6
FOXA1P55317 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
FOXA1P55317 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.05■■□□□ 1.6
FOXA1P55317 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.05■■□□□ 1.6
FOXA1P55317 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
FOXA1P55317 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
FOXA1P55317 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
FOXA1P55317 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
FOXA1P55317 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
FOXA1P55317 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
FOXA1P55317 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
FOXA1P55317 AP004833.2-201ENST00000532228 1454 ntBASIC25.02■■□□□ 1.6
FOXA1P55317 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.01■■□□□ 1.59
FOXA1P55317 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
FOXA1P55317 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.01■■□□□ 1.59
FOXA1P55317 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25■■□□□ 1.59
FOXA1P55317 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25■■□□□ 1.59
FOXA1P55317 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
FOXA1P55317 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
FOXA1P55317 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
FOXA1P55317 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
FOXA1P55317 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
FOXA1P55317 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
FOXA1P55317 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.98■■□□□ 1.59
FOXA1P55317 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
FOXA1P55317 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.98■■□□□ 1.59
FOXA1P55317 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
FOXA1P55317 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
FOXA1P55317 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
FOXA1P55317 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
FOXA1P55317 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.97■■□□□ 1.59
FOXA1P55317 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.97■■□□□ 1.59
FOXA1P55317 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.97■■□□□ 1.59
FOXA1P55317 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
FOXA1P55317 MIR762-201ENST00000390236 83 ntBASIC24.96■■□□□ 1.59
FOXA1P55317 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.96■■□□□ 1.59
FOXA1P55317 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
FOXA1P55317 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
FOXA1P55317 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
FOXA1P55317 AL121749.1-202ENST00000609313 2153 ntBASIC24.95■■□□□ 1.59
FOXA1P55317 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
FOXA1P55317 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
FOXA1P55317 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.93■■□□□ 1.58
FOXA1P55317 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.93■■□□□ 1.58
FOXA1P55317 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
FOXA1P55317 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
FOXA1P55317 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.92■■□□□ 1.58
FOXA1P55317 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.91■■□□□ 1.58
FOXA1P55317 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
FOXA1P55317 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
FOXA1P55317 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
FOXA1P55317 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.91■■□□□ 1.58
FOXA1P55317 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.91■■□□□ 1.58
FOXA1P55317 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
FOXA1P55317 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
FOXA1P55317 AC100797.4-201ENST00000631653 1827 ntBASIC24.9■■□□□ 1.58
FOXA1P55317 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
FOXA1P55317 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.89■■□□□ 1.58
FOXA1P55317 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
FOXA1P55317 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
FOXA1P55317 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.88■■□□□ 1.57
FOXA1P55317 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms