Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 TGA1tA(UGC)A 73 nt7.61□□□□□ -1.19
CUP9P41817 tA(UGC)EtA(UGC)E 73 nt7.61□□□□□ -1.19
CUP9P41817 tA(UGC)GtA(UGC)G 73 nt7.61□□□□□ -1.19
CUP9P41817 tA(UGC)LtA(UGC)L 73 nt7.61□□□□□ -1.19
CUP9P41817 tA(UGC)OtA(UGC)O 73 nt7.61□□□□□ -1.19
CUP9P41817 VMA11YPL234C 495 nt7.61□□□□□ -1.19
CUP9P41817 SUV3YPL029W 2214 nt7.61□□□□□ -1.19
CUP9P41817 MRS6YOR370C 1812 nt7.61□□□□□ -1.19
CUP9P41817 SRP54YPR088C 1626 nt7.6□□□□□ -1.19
CUP9P41817 MAE1YKL029C 2010 nt7.6□□□□□ -1.19
CUP9P41817 FCY1YPR062W 477 nt7.59□□□□□ -1.19
CUP9P41817 YHR219WYHR219W 1875 nt7.58□□□□□ -1.2
CUP9P41817 YKL053WYKL053W 375 nt7.58□□□□□ -1.2
CUP9P41817 YPT11YNL304W 1254 nt7.58□□□□□ -1.2
CUP9P41817 YOR343CYOR343C 327 nt7.58□□□□□ -1.2
CUP9P41817 CRC1YOR100C 984 nt7.57□□□□□ -1.2
CUP9P41817 YPL108WYPL108W 507 nt7.57□□□□□ -1.2
CUP9P41817 YKL133CYKL133C 1392 nt7.57□□□□□ -1.2
CUP9P41817 PAU21YOR394W 495 nt7.56□□□□□ -1.2
CUP9P41817 PAU22YPL282C 495 nt7.56□□□□□ -1.2
CUP9P41817 RIM2YBR192W 1134 nt7.56□□□□□ -1.2
CUP9P41817 SSL2YIL143C 2532 nt7.56□□□□□ -1.2
CUP9P41817 HRA1HRA1 564 nt7.55□□□□□ -1.2
CUP9P41817 ODC1YPL134C 933 nt7.55□□□□□ -1.2
CUP9P41817 ESBP6YNL125C 2022 nt7.55□□□□□ -1.2
CUP9P41817 RPL12BYDR418W 498 nt7.54□□□□□ -1.2
CUP9P41817 YFR020WYFR020W 699 nt7.54□□□□□ -1.2
CUP9P41817 SAN1YDR143C 1833 nt7.54□□□□□ -1.2
CUP9P41817 GRH1YDR517W 1119 nt7.53□□□□□ -1.2
CUP9P41817 LSR1LSR1 1175 nt7.53□□□□□ -1.2
CUP9P41817 SNX3YOR357C 489 nt7.53□□□□□ -1.2
CUP9P41817 YJL160CYJL160C 864 nt7.52□□□□□ -1.21
CUP9P41817 RPD3YNL330C 1302 nt7.52□□□□□ -1.21
CUP9P41817 RSM7YJR113C 744 nt7.51□□□□□ -1.21
CUP9P41817 YAL016C-AYAL016C-A 315 nt7.5□□□□□ -1.21
CUP9P41817 EMC3YKL207W 762 nt7.5□□□□□ -1.21
CUP9P41817 BSP1YPR171W 1731 nt7.49□□□□□ -1.21
CUP9P41817 KRR1YCL059C 951 nt7.49□□□□□ -1.21
CUP9P41817 YMR166CYMR166C 1107 nt7.49□□□□□ -1.21
CUP9P41817 TPO4YOR273C 1980 nt7.49□□□□□ -1.21
CUP9P41817 DMA2YNL116W 1569 nt7.49□□□□□ -1.21
CUP9P41817 KGD2YDR148C 1392 nt7.48□□□□□ -1.21
CUP9P41817 CWP2YKL096W-A 279 nt7.48□□□□□ -1.21
CUP9P41817 GAS1YMR307W 1680 nt7.47□□□□□ -1.21
CUP9P41817 MRP1YDR347W 966 nt7.47□□□□□ -1.21
CUP9P41817 SBP1YHL034C 885 nt7.47□□□□□ -1.21
CUP9P41817 YMR210WYMR210W 1350 nt7.46□□□□□ -1.21
CUP9P41817 HMG2YLR450W 3138 nt7.46□□□□□ -1.21
CUP9P41817 PSD1YNL169C 1503 nt7.46□□□□□ -1.22
CUP9P41817 PTC6YCR079W 1329 nt7.46□□□□□ -1.22
CUP9P41817 ILV2YMR108W 2064 nt7.45□□□□□ -1.22
CUP9P41817 LSP1YPL004C 1026 nt7.45□□□□□ -1.22
CUP9P41817 YRF1-2YER190W 5046 nt7.45□□□□□ -1.22
CUP9P41817 RFC1YOR217W 2586 nt7.44□□□□□ -1.22
CUP9P41817 MDM35YKL053C-A 261 nt7.43□□□□□ -1.22
CUP9P41817 YLR460CYLR460C 1131 nt7.43□□□□□ -1.22
CUP9P41817 YHR218WYHR218W 1812 nt7.43□□□□□ -1.22
CUP9P41817 RRT14YIL127C 621 nt7.42□□□□□ -1.22
CUP9P41817 RPC31YNL151C 756 nt7.41□□□□□ -1.22
CUP9P41817 MFT1YML062C 1179 nt7.4□□□□□ -1.22
CUP9P41817 GDH1YOR375C 1365 nt7.4□□□□□ -1.22
CUP9P41817 URA8YJR103W 1737 nt7.4□□□□□ -1.23
CUP9P41817 CAK1YFL029C 1107 nt7.39□□□□□ -1.23
CUP9P41817 CHS7YHR142W 951 nt7.39□□□□□ -1.23
CUP9P41817 CYT1YOR065W 930 nt7.39□□□□□ -1.23
CUP9P41817 YOR268CYOR268C 399 nt7.39□□□□□ -1.23
CUP9P41817 PET18YCR020C 648 nt7.38□□□□□ -1.23
CUP9P41817 DTR1YBR180W 1719 nt7.38□□□□□ -1.23
CUP9P41817 ADA2YDR448W 1305 nt7.37□□□□□ -1.23
CUP9P41817 EDC2YER035W 438 nt7.37□□□□□ -1.23
CUP9P41817 YER156CYER156C 1017 nt7.37□□□□□ -1.23
CUP9P41817 HXT10YFL011W 1641 nt7.37□□□□□ -1.23
CUP9P41817 OCH1YGL038C 1443 nt7.36□□□□□ -1.23
CUP9P41817 GTB1YDR221W 2109 nt7.36□□□□□ -1.23
CUP9P41817 DPL1YDR294C 1770 nt7.36□□□□□ -1.23
CUP9P41817 TAD2YJL035C 753 nt7.35□□□□□ -1.23
CUP9P41817 MET22YOL064C 1074 nt7.35□□□□□ -1.23
CUP9P41817 GGA2YHR108W 1758 nt7.35□□□□□ -1.23
CUP9P41817 YRF1-3YGR296W 5580 nt7.35□□□□□ -1.23
CUP9P41817 YRF1-6YNL339C 5580 nt7.35□□□□□ -1.23
CUP9P41817 YRF1-7YPL283C 5580 nt7.35□□□□□ -1.23
CUP9P41817 tL(UAA)B1tL(UAA)B1 84 nt7.34□□□□□ -1.23
CUP9P41817 tL(UAA)B2tL(UAA)B2 84 nt7.34□□□□□ -1.23
CUP9P41817 tL(UAA)DtL(UAA)D 84 nt7.34□□□□□ -1.23
CUP9P41817 SUP51tL(UAA)J 84 nt7.34□□□□□ -1.23
CUP9P41817 tL(UAA)KtL(UAA)K 84 nt7.34□□□□□ -1.23
CUP9P41817 tL(UAA)LtL(UAA)L 84 nt7.34□□□□□ -1.23
CUP9P41817 tL(UAA)NtL(UAA)N 84 nt7.34□□□□□ -1.23
CUP9P41817 YMR316C-BYMR316C-B 309 nt7.34□□□□□ -1.23
CUP9P41817 OLA1YBR025C 1185 nt7.34□□□□□ -1.23
CUP9P41817 YPR084WYPR084W 1371 nt7.33□□□□□ -1.24
CUP9P41817 UTR5YEL035C 501 nt7.32□□□□□ -1.24
CUP9P41817 YHL008CYHL008C 1884 nt7.32□□□□□ -1.24
CUP9P41817 YIR035CYIR035C 765 nt7.31□□□□□ -1.24
CUP9P41817 AGP3YFL055W 1677 nt7.31□□□□□ -1.24
CUP9P41817 PDC6YGR087C 1692 nt7.31□□□□□ -1.24
CUP9P41817 MFG1YDL233W 1377 nt7.31□□□□□ -1.24
CUP9P41817 ELP4YPL101W 1371 nt7.31□□□□□ -1.24
CUP9P41817 THI3YDL080C 1830 nt7.29□□□□□ -1.24
CUP9P41817 GPM1YKL152C 744 nt7.28□□□□□ -1.24
Retrieved 100 of 7,029 protein–RNA pairs in 56.8 ms