Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC33.23■■■□□ 2.91
CACNA1FO60840 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
CACNA1FO60840 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC33.21■■■□□ 2.91
CACNA1FO60840 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
CACNA1FO60840 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
CACNA1FO60840 AC135983.2-203ENST00000454486 1613 ntBASIC33.2■■■□□ 2.9
CACNA1FO60840 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
CACNA1FO60840 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC33.18■■■□□ 2.9
CACNA1FO60840 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
CACNA1FO60840 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC33.17■■■□□ 2.9
CACNA1FO60840 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
CACNA1FO60840 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CACNA1FO60840 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC33.16■■■□□ 2.9
CACNA1FO60840 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
CACNA1FO60840 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.14■■■□□ 2.9
CACNA1FO60840 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
CACNA1FO60840 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
CACNA1FO60840 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
CACNA1FO60840 MIR7108-201ENST00000614319 87 ntBASIC33.1■■■□□ 2.89
CACNA1FO60840 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33.1■■■□□ 2.89
CACNA1FO60840 AC127502.1-201ENST00000399971 1502 ntBASIC33.1■■■□□ 2.89
CACNA1FO60840 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC33.1■■■□□ 2.89
CACNA1FO60840 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CACNA1FO60840 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CACNA1FO60840 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CACNA1FO60840 CALM3-209ENST00000597743 577 ntTSL 4 BASIC33.09■■■□□ 2.89
CACNA1FO60840 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
CACNA1FO60840 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC33.09■■■□□ 2.89
CACNA1FO60840 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC33.09■■■□□ 2.89
CACNA1FO60840 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
CACNA1FO60840 ABCB10P1-201ENST00000614297 2181 ntBASIC33.08■■■□□ 2.89
CACNA1FO60840 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.89
CACNA1FO60840 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
CACNA1FO60840 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
CACNA1FO60840 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC33.07■■■□□ 2.88
CACNA1FO60840 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33.07■■■□□ 2.88
CACNA1FO60840 LINC01971-201ENST00000617888 1048 ntBASIC33.07■■■□□ 2.88
CACNA1FO60840 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CACNA1FO60840 AGPS-202ENST00000409888 815 ntTSL 4 BASIC33.05■■■□□ 2.88
CACNA1FO60840 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC33.05■■■□□ 2.88
CACNA1FO60840 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CACNA1FO60840 ZNRF2P2-203ENST00000454624 420 ntBASIC33.05■■■□□ 2.88
CACNA1FO60840 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC33.04■■■□□ 2.88
CACNA1FO60840 WHAMMP2-203ENST00000563942 1603 ntBASIC33.04■■■□□ 2.88
CACNA1FO60840 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC33.04■■■□□ 2.88
CACNA1FO60840 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CACNA1FO60840 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC33.03■■■□□ 2.88
CACNA1FO60840 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.02■■■□□ 2.88
CACNA1FO60840 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC33.02■■■□□ 2.88
CACNA1FO60840 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CACNA1FO60840 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.01■■■□□ 2.88
CACNA1FO60840 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC33.01■■■□□ 2.87
CACNA1FO60840 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC33.01■■■□□ 2.87
CACNA1FO60840 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CACNA1FO60840 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC33■■■□□ 2.87
CACNA1FO60840 CR559946.2-201ENST00000623684 991 ntBASIC33■■■□□ 2.87
CACNA1FO60840 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CACNA1FO60840 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC32.98■■■□□ 2.87
CACNA1FO60840 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
CACNA1FO60840 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC32.97■■■□□ 2.87
CACNA1FO60840 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC32.97■■■□□ 2.87
CACNA1FO60840 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.96■■■□□ 2.87
CACNA1FO60840 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
CACNA1FO60840 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
CACNA1FO60840 HLA-V-202ENST00000446817 847 ntBASIC32.95■■■□□ 2.87
CACNA1FO60840 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.95■■■□□ 2.87
CACNA1FO60840 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC32.95■■■□□ 2.86
CACNA1FO60840 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
CACNA1FO60840 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC32.94■■■□□ 2.86
CACNA1FO60840 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
CACNA1FO60840 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CACNA1FO60840 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC32.93■■■□□ 2.86
CACNA1FO60840 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CACNA1FO60840 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC32.92■■■□□ 2.86
CACNA1FO60840 DUX4L11-201ENST00000611504 1267 ntBASIC32.92■■■□□ 2.86
CACNA1FO60840 DUX4L12-201ENST00000614593 1267 ntBASIC32.92■■■□□ 2.86
CACNA1FO60840 DUX4L14-201ENST00000621227 1267 ntBASIC32.92■■■□□ 2.86
CACNA1FO60840 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.92■■■□□ 2.86
CACNA1FO60840 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC32.92■■■□□ 2.86
CACNA1FO60840 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.91■■■□□ 2.86
CACNA1FO60840 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
CACNA1FO60840 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.91■■■□□ 2.86
CACNA1FO60840 DUX4L13-201ENST00000554103 1267 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L15-201ENST00000611059 1267 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L23-201ENST00000615195 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L24-201ENST00000617576 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L22-201ENST00000618238 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L20-201ENST00000619712 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L21-201ENST00000622058 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L10-201ENST00000622460 1267 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 DUX4L25-201ENST00000624915 1269 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.9■■■□□ 2.86
CACNA1FO60840 MIR3648-2-201ENST00000581792 180 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 MIR3648-1-201ENST00000615959 180 ntBASIC32.9■■■□□ 2.86
CACNA1FO60840 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC32.9■■■□□ 2.86
CACNA1FO60840 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CACNA1FO60840 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.89■■■□□ 2.86
CACNA1FO60840 AP004833.2-201ENST00000532228 1454 ntBASIC32.89■■■□□ 2.86
CACNA1FO60840 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CACNA1FO60840 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC32.89■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms