Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MSH4O15457 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.41■■■□□ 2.3
MSH4O15457 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH4O15457 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH4O15457 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
MSH4O15457 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
MSH4O15457 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.4■■■□□ 2.3
MSH4O15457 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
MSH4O15457 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
MSH4O15457 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
MSH4O15457 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH4O15457 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH4O15457 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.37■■■□□ 2.29
MSH4O15457 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.37■■■□□ 2.29
MSH4O15457 MIR7108-201ENST00000614319 87 ntBASIC29.37■■■□□ 2.29
MSH4O15457 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.37■■■□□ 2.29
MSH4O15457 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.36■■■□□ 2.29
MSH4O15457 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
MSH4O15457 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
MSH4O15457 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.33■■■□□ 2.29
MSH4O15457 LINC00273-201ENST00000539813 1452 ntBASIC29.33■■■□□ 2.29
MSH4O15457 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
MSH4O15457 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.32■■■□□ 2.28
MSH4O15457 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH4O15457 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
MSH4O15457 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH4O15457 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.32■■■□□ 2.28
MSH4O15457 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
MSH4O15457 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
MSH4O15457 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH4O15457 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH4O15457 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH4O15457 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.31■■■□□ 2.28
MSH4O15457 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH4O15457 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
MSH4O15457 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH4O15457 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
MSH4O15457 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH4O15457 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH4O15457 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.28■■■□□ 2.28
MSH4O15457 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH4O15457 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.28■■■□□ 2.28
MSH4O15457 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
MSH4O15457 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH4O15457 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
MSH4O15457 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.27■■■□□ 2.28
MSH4O15457 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.26■■■□□ 2.27
MSH4O15457 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH4O15457 LINC01971-201ENST00000617888 1048 ntBASIC29.26■■■□□ 2.27
MSH4O15457 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH4O15457 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH4O15457 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH4O15457 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH4O15457 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
MSH4O15457 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.25■■■□□ 2.27
MSH4O15457 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH4O15457 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH4O15457 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.24■■■□□ 2.27
MSH4O15457 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
MSH4O15457 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
MSH4O15457 AC135983.2-203ENST00000454486 1613 ntBASIC29.23■■■□□ 2.27
MSH4O15457 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
MSH4O15457 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH4O15457 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
MSH4O15457 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
MSH4O15457 DUX4L11-201ENST00000611504 1267 ntBASIC29.2■■■□□ 2.26
MSH4O15457 DUX4L12-201ENST00000614593 1267 ntBASIC29.2■■■□□ 2.26
MSH4O15457 DUX4L14-201ENST00000621227 1267 ntBASIC29.2■■■□□ 2.26
MSH4O15457 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.2■■■□□ 2.26
MSH4O15457 WHAMMP2-203ENST00000563942 1603 ntBASIC29.2■■■□□ 2.26
MSH4O15457 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.18■■■□□ 2.26
MSH4O15457 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.18■■■□□ 2.26
MSH4O15457 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.18■■■□□ 2.26
MSH4O15457 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
MSH4O15457 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.17■■■□□ 2.26
MSH4O15457 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
MSH4O15457 AL139393.2-201ENST00000608721 2025 ntBASIC29.16■■■□□ 2.26
MSH4O15457 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
MSH4O15457 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
MSH4O15457 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.15■■■□□ 2.26
MSH4O15457 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.15■■■□□ 2.26
MSH4O15457 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
MSH4O15457 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH4O15457 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH4O15457 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.12■■■□□ 2.25
MSH4O15457 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.11■■■□□ 2.25
MSH4O15457 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
MSH4O15457 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH4O15457 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.1■■■□□ 2.25
MSH4O15457 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
MSH4O15457 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L13-201ENST00000554103 1267 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L15-201ENST00000611059 1267 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L23-201ENST00000615195 1269 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L24-201ENST00000617576 1269 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L22-201ENST00000618238 1269 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L20-201ENST00000619712 1269 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L21-201ENST00000622058 1269 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L10-201ENST00000622460 1267 ntBASIC29.09■■■□□ 2.25
MSH4O15457 DUX4L25-201ENST00000624915 1269 ntBASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms