Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CACNA1AO00555 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.57■■□□□ 1.68
CACNA1AO00555 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CACNA1AO00555 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CACNA1AO00555 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CACNA1AO00555 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CACNA1AO00555 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CACNA1AO00555 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CACNA1AO00555 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.55■■□□□ 1.68
CACNA1AO00555 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CACNA1AO00555 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.54■■□□□ 1.68
CACNA1AO00555 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1AO00555 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1AO00555 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.53■■□□□ 1.68
CACNA1AO00555 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1AO00555 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.52■■□□□ 1.68
CACNA1AO00555 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.52■■□□□ 1.68
CACNA1AO00555 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1AO00555 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.52■■□□□ 1.68
CACNA1AO00555 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1AO00555 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1AO00555 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.51■■□□□ 1.67
CACNA1AO00555 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CACNA1AO00555 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1AO00555 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1AO00555 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CACNA1AO00555 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CACNA1AO00555 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CACNA1AO00555 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.46■■□□□ 1.67
CACNA1AO00555 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CACNA1AO00555 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
CACNA1AO00555 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CACNA1AO00555 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CACNA1AO00555 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.46■■□□□ 1.67
CACNA1AO00555 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC25.45■■□□□ 1.66
CACNA1AO00555 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.44■■□□□ 1.66
CACNA1AO00555 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CACNA1AO00555 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.43■■□□□ 1.66
CACNA1AO00555 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.43■■□□□ 1.66
CACNA1AO00555 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.42■■□□□ 1.66
CACNA1AO00555 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CACNA1AO00555 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC25.41■■□□□ 1.66
CACNA1AO00555 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CACNA1AO00555 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC25.41■■□□□ 1.66
CACNA1AO00555 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
CACNA1AO00555 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.41■■□□□ 1.66
CACNA1AO00555 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.4■■□□□ 1.66
CACNA1AO00555 AC060814.1-201ENST00000554326 538 ntBASIC25.4■■□□□ 1.66
CACNA1AO00555 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.4■■□□□ 1.66
CACNA1AO00555 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1AO00555 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1AO00555 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1AO00555 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.39■■□□□ 1.65
CACNA1AO00555 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CACNA1AO00555 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1AO00555 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC25.38■■□□□ 1.65
CACNA1AO00555 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.38■■□□□ 1.65
CACNA1AO00555 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1AO00555 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1AO00555 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CACNA1AO00555 THA1P-201ENST00000590384 1145 ntBASIC25.36■■□□□ 1.65
CACNA1AO00555 AC009299.2-201ENST00000482477 511 ntBASIC25.36■■□□□ 1.65
CACNA1AO00555 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CACNA1AO00555 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CACNA1AO00555 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CACNA1AO00555 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CACNA1AO00555 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
CACNA1AO00555 AC092296.2-201ENST00000589470 999 ntBASIC25.32■■□□□ 1.64
CACNA1AO00555 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CACNA1AO00555 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.32■■□□□ 1.64
CACNA1AO00555 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.32■■□□□ 1.64
CACNA1AO00555 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
CACNA1AO00555 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CACNA1AO00555 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CACNA1AO00555 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CACNA1AO00555 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.3■■□□□ 1.64
CACNA1AO00555 GUSBP5-201ENST00000418136 578 ntBASIC25.29■■□□□ 1.64
CACNA1AO00555 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1AO00555 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.28■■□□□ 1.64
CACNA1AO00555 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1AO00555 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC25.28■■□□□ 1.64
CACNA1AO00555 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.28■■□□□ 1.64
CACNA1AO00555 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.28■■□□□ 1.64
CACNA1AO00555 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC25.27■■□□□ 1.64
CACNA1AO00555 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1AO00555 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.25■■□□□ 1.63
CACNA1AO00555 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.25■■□□□ 1.63
CACNA1AO00555 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1AO00555 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
CACNA1AO00555 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1AO00555 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1AO00555 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1AO00555 AL356441.2-201ENST00000443009 864 ntBASIC25.23■■□□□ 1.63
CACNA1AO00555 AC025884.2-201ENST00000553429 711 ntBASIC25.23■■□□□ 1.63
CACNA1AO00555 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
CACNA1AO00555 AC129492.7-201ENST00000622992 756 ntBASIC25.23■■□□□ 1.63
CACNA1AO00555 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.23■■□□□ 1.63
CACNA1AO00555 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.23■■□□□ 1.63
CACNA1AO00555 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC25.23■■□□□ 1.63
CACNA1AO00555 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms