Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC079171.1-201ENST00000568788 914 ntBASIC7.99□□□□□ -1.13
MSX1P28360 ROCK1P1-201ENST00000573767 549 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC015909.4-201ENST00000577175 578 ntTSL 4 BASIC7.99□□□□□ -1.13
MSX1P28360 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 AC006115.1-201ENST00000599726 517 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 AL049829.3-202ENST00000604278 711 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 AC119619.1-201ENST00000619728 112 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC234791.1-201ENST00000620830 1203 ntBASIC7.99□□□□□ -1.13
MSX1P28360 CU639417.5-201ENST00000623983 476 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 HLA-B-258ENST00000640615 240 ntBASIC7.99□□□□□ -1.13
MSX1P28360 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 ZNF35-201ENST00000296092 2503 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 AC074281.1-201ENST00000436419 2081 ntBASIC7.99□□□□□ -1.13
MSX1P28360 NELL1-203ENST00000357134 3022 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 MAPK10-240ENST00000639175 2596 ntAPPRIS P2 TSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 AL450992.1-201ENST00000432386 4109 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
MSX1P28360 AL049543.1-201ENST00000499525 2874 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 DPF3-203ENST00000541685 4077 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
MSX1P28360 IKZF3-205ENST00000350532 1413 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 IKZF3-206ENST00000351680 1413 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 EHHADH-AS1-201ENST00000417720 1416 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 AL359715.4-201ENST00000606629 1436 ntBASIC7.98□□□□□ -1.13
MSX1P28360 FAM126A-202ENST00000409923 3130 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 AL391994.1-201ENST00000254724 282 ntBASIC7.98□□□□□ -1.13
MSX1P28360 ODF1-201ENST00000285402 1013 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 OR56B2P-201ENST00000317102 954 ntBASIC7.98□□□□□ -1.13
MSX1P28360 PSMD10-205ENST00000372295 779 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 HMGB1P10-201ENST00000395823 563 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.98□□□□□ -1.13
MSX1P28360 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 MTATP6P27-201ENST00000416987 621 ntBASIC7.98□□□□□ -1.13
MSX1P28360 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 MRPS36P1-201ENST00000421291 307 ntBASIC7.98□□□□□ -1.13
MSX1P28360 GUSBP4-201ENST00000423899 672 ntBASIC7.98□□□□□ -1.13
MSX1P28360 RPL36P2-201ENST00000426026 315 ntBASIC7.98□□□□□ -1.13
MSX1P28360 FAF2P1-201ENST00000429974 1298 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AL354761.1-201ENST00000434190 526 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AL590103.1-201ENST00000434488 307 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AL122003.1-201ENST00000435206 784 ntBASIC7.98□□□□□ -1.13
MSX1P28360 SDHDP2-201ENST00000436937 465 ntBASIC7.98□□□□□ -1.13
MSX1P28360 ARAFP2-201ENST00000440565 559 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC006978.2-201ENST00000442800 666 ntAPPRIS P1 TSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 ZNF619P1-201ENST00000446539 752 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 RPE-216ENST00000454822 2130 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 MEF2AP1-201ENST00000454867 863 ntBASIC7.98□□□□□ -1.13
MSX1P28360 GTF2IP12-201ENST00000456547 356 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AL096803.1-201ENST00000456921 1021 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC004890.1-201ENST00000461005 181 ntBASIC7.98□□□□□ -1.13
MSX1P28360 RN7SL28P-201ENST00000488836 298 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC7.98□□□□□ -1.13
MSX1P28360 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 ALG1L12P-201ENST00000515046 434 ntBASIC7.98□□□□□ -1.13
MSX1P28360 PRELID3BP4-201ENST00000515476 571 ntBASIC7.98□□□□□ -1.13
MSX1P28360 RNU6-319P-201ENST00000516025 108 ntBASIC7.98□□□□□ -1.13
MSX1P28360 RNU6-943P-201ENST00000516960 98 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC7.98□□□□□ -1.13
MSX1P28360 AC092709.1-201ENST00000521355 1045 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC010834.2-201ENST00000523945 530 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AP003122.1-201ENST00000527402 755 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 OR4A21P-201ENST00000532759 944 ntBASIC7.98□□□□□ -1.13
MSX1P28360 C11orf70-205ENST00000534360 520 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
MSX1P28360 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 AC005833.4-201ENST00000542988 449 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 AC016954.1-201ENST00000549976 745 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC007954.1-201ENST00000554198 494 ntBASIC7.98□□□□□ -1.13
MSX1P28360 HIGD1AP17-201ENST00000554576 276 ntBASIC7.98□□□□□ -1.13
MSX1P28360 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AC023905.1-203ENST00000560180 765 ntTSL 5 BASIC7.98□□□□□ -1.13
MSX1P28360 EIF5A2P1-201ENST00000564027 460 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC061975.4-201ENST00000578466 776 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AP001025.3-201ENST00000578787 864 ntTSL 3 BASIC7.98□□□□□ -1.13
MSX1P28360 AC090616.5-202ENST00000582111 297 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC083899.3-201ENST00000603413 594 ntBASIC7.98□□□□□ -1.13
MSX1P28360 FRG2MP-201ENST00000613317 856 ntBASIC7.98□□□□□ -1.13
MSX1P28360 AC026468.1-201ENST00000614981 107 ntBASIC7.98□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms