RNA–Protein interactions for RNA: ENST00000394221.2

DHFR2-202, Transcript of dihydrofolate reductase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR2, Length 4,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR2-202ENST00000394221 PELP1Q8IZL8 1130 aaKnown RBP15.07■□□□□ 0
DHFR2-202ENST00000394221 MYT1Q01538 1121 aa14.75□□□□□ -0.05
DHFR2-202ENST00000394221 HRCP23327 699 aa14.41□□□□□ -0.1
DHFR2-202ENST00000394221 PPARGC1BQ86YN6 1023 aaKnown RBP14.03□□□□□ -0.16
DHFR2-202ENST00000394221 TTBK1Q5TCY1 1321 aaPredicted RBP14□□□□□ -0.17
DHFR2-202ENST00000394221 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
DHFR2-202ENST00000394221 PCGF6Q9BYE7 350 aa13.85□□□□□ -0.19
DHFR2-202ENST00000394221 NISCHQ9Y2I1 1504 aa13.71□□□□□ -0.21
DHFR2-202ENST00000394221 BCL11AQ9H165 835 aa13.53□□□□□ -0.24
DHFR2-202ENST00000394221 CENPBP07199 599 aaPredicted RBP13.49□□□□□ -0.25
DHFR2-202ENST00000394221 ACIN1Q9UKV3 1341 aaKnown RBP13.49□□□□□ -0.25
DHFR2-202ENST00000394221 PRKCSHP14314 528 aaPredicted RBP13.47□□□□□ -0.25
DHFR2-202ENST00000394221 ZEB1P37275 1124 aaPredicted RBP13.44□□□□□ -0.26
DHFR2-202ENST00000394221 GTF3C3Q9Y5Q9 886 aa13.43□□□□□ -0.26
DHFR2-202ENST00000394221 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
DHFR2-202ENST00000394221 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
DHFR2-202ENST00000394221 FAM9AQ8IZU1 332 aaPredicted RBP13.33□□□□□ -0.28
DHFR2-202ENST00000394221 TRIM26Q12899 539 aaPredicted RBP13.23□□□□□ -0.29
DHFR2-202ENST00000394221 MYO15BQ96JP2 1530 aa13.21□□□□□ -0.3
DHFR2-202ENST00000394221 DCAF1Q9Y4B6 1507 aa13.13□□□□□ -0.31
DHFR2-202ENST00000394221 SUPT5HO00267 1087 aaKnown RBP13.13□□□□□ -0.31
DHFR2-202ENST00000394221 ANP32EQ9BTT0 268 aa13.12□□□□□ -0.31
DHFR2-202ENST00000394221 CCDC180Q9P1Z9 1646 aa13.05□□□□□ -0.32
DHFR2-202ENST00000394221 APLP2Q06481 763 aa13.04□□□□□ -0.32
DHFR2-202ENST00000394221 DCAF8L2P0C7V8 631 aa13.04□□□□□ -0.32
DHFR2-202ENST00000394221 CHIC1Q5VXU3 224 aa13.02□□□□□ -0.33
DHFR2-202ENST00000394221 DIEXFQ68CQ4 756 aaKnown RBP12.94□□□□□ -0.34
DHFR2-202ENST00000394221 CSRNP3Q8WYN3 585 aa12.94□□□□□ -0.34
DHFR2-202ENST00000394221 YTHDC1Q96MU7 727 aaKnown RBP12.87□□□□□ -0.35
DHFR2-202ENST00000394221 SHROOM4Q9ULL8 1493 aa12.85□□□□□ -0.35
DHFR2-202ENST00000394221 LOC105371045A0A1W2PR82 267 aa12.8□□□□□ -0.36
DHFR2-202ENST00000394221 CCER1Q8TC90 406 aaPredicted RBP12.7□□□□□ -0.38
DHFR2-202ENST00000394221 TSHZ2Q9NRE2 1034 aa12.69□□□□□ -0.38
DHFR2-202ENST00000394221 CLSPNQ9HAW4 1339 aa12.66□□□□□ -0.38
DHFR2-202ENST00000394221 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
DHFR2-202ENST00000394221 SUPT16HQ9Y5B9 1047 aaKnown RBP12.58□□□□□ -0.4
DHFR2-202ENST00000394221 ANO8Q9HCE9 1232 aaPredicted RBP12.58□□□□□ -0.4
DHFR2-202ENST00000394221 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
DHFR2-202ENST00000394221 TRIM41Q8WV44 630 aa12.53□□□□□ -0.4
DHFR2-202ENST00000394221 ZNF316A6NFI3 1004 aaPredicted RBP12.53□□□□□ -0.4
DHFR2-202ENST00000394221 MIER1Q8N108 512 aa12.47□□□□□ -0.41
DHFR2-202ENST00000394221 MYT1LQ9UL68 1186 aa12.47□□□□□ -0.41
DHFR2-202ENST00000394221 EIF5BO60841 1220 aaKnown RBP12.46□□□□□ -0.41
DHFR2-202ENST00000394221 UBE2Q2Q8WVN8 375 aa12.44□□□□□ -0.42
DHFR2-202ENST00000394221 AEBP2Q6ZN18 517 aaPredicted RBP12.42□□□□□ -0.42
DHFR2-202ENST00000394221 SALL2Q9Y467 1007 aaPredicted RBP12.36□□□□□ -0.43
DHFR2-202ENST00000394221 RBM19Q9Y4C8 960 aaKnown RBP12.36□□□□□ -0.43
DHFR2-202ENST00000394221 DEKP35659 375 aaKnown RBP12.36□□□□□ -0.43
DHFR2-202ENST00000394221 CCDC136Q96JN2 1154 aa12.36□□□□□ -0.43
DHFR2-202ENST00000394221 ERICH6BQ5W0A0 696 aa12.35□□□□□ -0.43
DHFR2-202ENST00000394221 BCANQ96GW7 911 aa12.33□□□□□ -0.44
DHFR2-202ENST00000394221 ABCC9O60706 1549 aa12.28□□□□□ -0.44
DHFR2-202ENST00000394221 DAXXQ9UER7 740 aaPredicted RBP12.23□□□□□ -0.45
DHFR2-202ENST00000394221 NEFLP07196 543 aa12.23□□□□□ -0.45
DHFR2-202ENST00000394221 PKNOX2Q96KN3 472 aa12.23□□□□□ -0.45
DHFR2-202ENST00000394221 MSH5O43196 834 aa12.22□□□□□ -0.45
DHFR2-202ENST00000394221 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.22□□□□□ -0.45
DHFR2-202ENST00000394221 FKBP8Q14318 412 aa12.19□□□□□ -0.46
DHFR2-202ENST00000394221 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
DHFR2-202ENST00000394221 FANCIQ9NVI1 1328 aa12.15□□□□□ -0.46
DHFR2-202ENST00000394221 RTN4Q9NQC3 1192 aaKnown RBP12.12□□□□□ -0.47
DHFR2-202ENST00000394221 PODXL2Q9NZ53 605 aa12.11□□□□□ -0.47
DHFR2-202ENST00000394221 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
DHFR2-202ENST00000394221 RTL5Q5HYW3 569 aaPredicted RBP12.09□□□□□ -0.47
DHFR2-202ENST00000394221 ITGAEP38570 1179 aa12.08□□□□□ -0.48
DHFR2-202ENST00000394221 NBR1Q14596 966 aa12.07□□□□□ -0.48
DHFR2-202ENST00000394221 CDK11AQ9UQ88 783 aaPredicted RBP12.07□□□□□ -0.48
DHFR2-202ENST00000394221 IL27Q8NEV9 243 aa12.04□□□□□ -0.48
DHFR2-202ENST00000394221 GLIPR1L2Q4G1C9 344 aa12.02□□□□□ -0.49
DHFR2-202ENST00000394221 NOP58Q9Y2X3 529 aaKnown RBP11.95□□□□□ -0.5
DHFR2-202ENST00000394221 PABPN1Q86U42 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
DHFR2-202ENST00000394221 VSIG10Q8N0Z9 540 aa11.83□□□□□ -0.52
DHFR2-202ENST00000394221 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
DHFR2-202ENST00000394221 RSPH6AQ9H0K4 717 aa11.81□□□□□ -0.52
DHFR2-202ENST00000394221 HNRNPUL2Q1KMD3 747 aaKnown RBP11.81□□□□□ -0.52
DHFR2-202ENST00000394221 ZMYND15Q9H091 742 aa11.8□□□□□ -0.52
DHFR2-202ENST00000394221 KCNH8Q96L42 1107 aa11.79□□□□□ -0.52
DHFR2-202ENST00000394221 ANP32AP39687 249 aaKnown RBP11.79□□□□□ -0.52
DHFR2-202ENST00000394221 PAK3O75914 559 aaPredicted RBP11.78□□□□□ -0.52
DHFR2-202ENST00000394221 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
DHFR2-202ENST00000394221 TRIM52Q96A61 297 aa11.74□□□□□ -0.53
DHFR2-202ENST00000394221 NEFMP07197 916 aa11.72□□□□□ -0.53
DHFR2-202ENST00000394221 ZCCHC6Q5VYS8 1495 aaKnown RBP11.72□□□□□ -0.53
DHFR2-202ENST00000394221 C11orf95C9JLR9 678 aaPredicted RBP11.72□□□□□ -0.53
DHFR2-202ENST00000394221 IRX6P78412 446 aaPredicted RBP11.71□□□□□ -0.53
DHFR2-202ENST00000394221 A0A0U1RQG5 324 aaPredicted RBP11.7□□□□□ -0.54
DHFR2-202ENST00000394221 BRPF3Q9ULD4 1205 aa11.69□□□□□ -0.54
DHFR2-202ENST00000394221 IPO9Q96P70 1041 aaKnown RBP11.69□□□□□ -0.54
DHFR2-202ENST00000394221 PPP4R2Q9NY27 417 aa11.67□□□□□ -0.54
DHFR2-202ENST00000394221 USP35Q9P2H5 1018 aa11.66□□□□□ -0.54
DHFR2-202ENST00000394221 WRNQ14191 1432 aaPredicted RBP eCLIP11.65□□□□□ -0.55
DHFR2-202ENST00000394221 WASHC2AQ641Q2 1341 aa11.64□□□□□ -0.55
DHFR2-202ENST00000394221 PDE4CQ08493 712 aa11.64□□□□□ -0.55
DHFR2-202ENST00000394221 WASHC2CQ9Y4E1 1318 aa11.62□□□□□ -0.55
DHFR2-202ENST00000394221 LAS1LQ9Y4W2 734 aaKnown RBP11.6□□□□□ -0.55
DHFR2-202ENST00000394221 PPM1GO15355 546 aaPredicted RBP11.59□□□□□ -0.55
DHFR2-202ENST00000394221 ANP32CO43423 234 aa11.59□□□□□ -0.55
DHFR2-202ENST00000394221 DDX10Q13206 875 aaKnown RBP11.59□□□□□ -0.55
DHFR2-202ENST00000394221 HSP90AA2PQ14568 343 aaPredicted RBP11.59□□□□□ -0.55
DHFR2-202ENST00000394221 FAM43AQ8N2R8 423 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms