Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 EXO1-202ENST00000366548 3473 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
LRCH3Q96II8 DNASE1-201ENST00000246949 4200 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 NUMA1-201ENST00000351960 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 LY9-203ENST00000368037 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 EFHC1-213ENST00000635996 2548 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 PCDH15-223ENST00000495484 1896 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC008537.3-201ENST00000623128 1881 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 ENTPD1-203ENST00000371207 1903 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 ABCA8-203ENST00000430352 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 LINC00243-201ENST00000399196 2052 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 H3F3AP6-201ENST00000230495 411 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 RARRES3-201ENST00000255688 749 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 OR56B2P-201ENST00000317102 954 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 NACA3P-201ENST00000359690 648 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 H3F3AP4-201ENST00000369387 411 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 PAGE5-203ENST00000374955 540 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 RPL5P20-201ENST00000403848 896 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL354751.2-201ENST00000415471 210 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 OR4K6P-201ENST00000416478 897 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 PAICSP7-201ENST00000419829 962 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 TTC4P1-201ENST00000427137 1158 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 TRIM60P18-201ENST00000441518 828 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 HMGB1P48-201ENST00000446155 598 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 TDRG1-204ENST00000451810 919 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 RPL10AP3-201ENST00000462503 651 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 RPL12P21-201ENST00000472214 518 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC116337.2-201ENST00000477662 156 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 RPL5P29-201ENST00000482972 894 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 MYADML-203ENST00000491596 951 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC097173.1-201ENST00000505862 819 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC226119.2-201ENST00000513501 530 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC093012.1-202ENST00000549403 582 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 SMARCE1P3-201ENST00000553649 1231 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 HIGD1AP17-201ENST00000554576 276 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 KCNH6-205ENST00000583023 3821 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC011477.1-201ENST00000591884 544 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL161729.3-201ENST00000603533 673 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 FXYD6P1-201ENST00000604857 285 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC106900.2-201ENST00000604994 317 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL161729.2-201ENST00000605700 456 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL109933.4-201ENST00000612111 157 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC099811.5-201ENST00000617211 819 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 C20orf78-202ENST00000623418 606 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL121594.6-201ENST00000633440 261 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 NELL1-203ENST00000357134 3022 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 EPB41L2-221ENST00000529208 3023 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 PACRG-AS2-201ENST00000418665 1300 ntTSL 2 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 SLC2A14-215ENST00000542546 3120 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL590426.1-201ENST00000440811 2285 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC130456.1-201ENST00000565085 1363 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 AL023280.1-201ENST00000414840 1423 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 DYNLRB1-201ENST00000300469 1464 ntTSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 FBXW7-205ENST00000603548 2562 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 PPP4R1L-202ENST00000334187 2746 ntBASIC9.45□□□□□ -0.9
LRCH3Q96II8 MIR3976HG-202ENST00000566533 1690 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LRCH3Q96II8 AC025283.2-203ENST00000618352 2905 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
LRCH3Q96II8 RBBP8-205ENST00000399725 3260 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 TAF1A-201ENST00000350027 1966 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 TTC5-201ENST00000258821 4779 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 CACNB2-204ENST00000377315 3461 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 COL6A3-201ENST00000295550 10749 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 MAPK1IP1L-205ENST00000622254 2836 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 EIF1AD-201ENST00000312234 2887 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 MEIS2-206ENST00000424352 2917 ntAPPRIS P4 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 CEACAM22P-201ENST00000446628 3016 ntTSL 2 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 DIAPH3-203ENST00000400319 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 ZNF780B-201ENST00000221355 3538 ntTSL 2 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 LINC00970-201ENST00000366408 1129 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LRCH3Q96II8 RNVU1-7-201ENST00000383858 164 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 Y_RNA.465-201ENST00000384293 102 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 MSRB1P1-201ENST00000396851 354 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 TPMTP3-201ENST00000411928 735 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 IFNA12P-201ENST00000413147 571 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC9.44□□□□□ -0.9
LRCH3Q96II8 CYCSP46-201ENST00000423569 204 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 C1DP1-201ENST00000426049 402 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 CNOT7P1-201ENST00000429006 852 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 PAICSP5-201ENST00000430406 1217 ntBASIC9.44□□□□□ -0.9
LRCH3Q96II8 AC005534.2-201ENST00000431047 433 ntBASIC9.44□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms