RNA–Protein interactions for RNA: ENST00000446155.1

HMGB1P48-201, Transcript of high mobility group box 1 pseudogene 48, humanhuman

BASIC

Gene HMGB1P48, Length 598 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P48-201ENST00000446155 AEBP2Q6ZN18 517 aaPredicted RBP22.3■■□□□ 1.16
HMGB1P48-201ENST00000446155 CHIC1Q5VXU3 224 aa21.93■■□□□ 1.1
HMGB1P48-201ENST00000446155 PHF23Q9BUL5 403 aaPredicted RBP19.33■□□□□ 0.68
HMGB1P48-201ENST00000446155 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
HMGB1P48-201ENST00000446155 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
HMGB1P48-201ENST00000446155 FOXD1Q16676 465 aa17.49■□□□□ 0.39
HMGB1P48-201ENST00000446155 PPP6R1Q9UPN7 881 aa16.98■□□□□ 0.31
HMGB1P48-201ENST00000446155 ADRA2BP18089 450 aa16.94■□□□□ 0.3
HMGB1P48-201ENST00000446155 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
HMGB1P48-201ENST00000446155 MSH5O43196 834 aa16.01■□□□□ 0.15
HMGB1P48-201ENST00000446155 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
HMGB1P48-201ENST00000446155 KCNA4P22459 653 aa15.61■□□□□ 0.09
HMGB1P48-201ENST00000446155 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
HMGB1P48-201ENST00000446155 NCBP3Q53F19 620 aaKnown RBP15.34■□□□□ 0.05
HMGB1P48-201ENST00000446155 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
HMGB1P48-201ENST00000446155 CNKSR2Q8WXI2 1034 aa15.27■□□□□ 0.04
HMGB1P48-201ENST00000446155 NPM3O75607 178 aaKnown RBP15.19■□□□□ 0.02
HMGB1P48-201ENST00000446155 DMRT2Q9Y5R5 561 aa15.09■□□□□ 0.01
HMGB1P48-201ENST00000446155 RNF216Q9NWF9 866 aaPredicted RBP14.94□□□□□ -0.02
HMGB1P48-201ENST00000446155 HOXD11P31277 338 aaPredicted RBP14.88□□□□□ -0.03
HMGB1P48-201ENST00000446155 SLC4A1APQ9BWU0 796 aaKnown RBP14.85□□□□□ -0.03
HMGB1P48-201ENST00000446155 DNAJC5BQ9UF47 199 aa14.84□□□□□ -0.03
HMGB1P48-201ENST00000446155 EHMT2Q96KQ7 1210 aa14.59□□□□□ -0.07
HMGB1P48-201ENST00000446155 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
HMGB1P48-201ENST00000446155 ZBTB22O15209 634 aa14.4□□□□□ -0.1
HMGB1P48-201ENST00000446155 SLC4A2P04920 1241 aa14.33□□□□□ -0.12
HMGB1P48-201ENST00000446155 FOXD4L1Q9NU39 408 aa14.3□□□□□ -0.12
HMGB1P48-201ENST00000446155 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
HMGB1P48-201ENST00000446155 DCAF8L1A6NGE4 600 aa14.28□□□□□ -0.12
HMGB1P48-201ENST00000446155 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.05□□□□□ -0.16
HMGB1P48-201ENST00000446155 MYCNP04198 464 aaPredicted RBP14□□□□□ -0.17
HMGB1P48-201ENST00000446155 U3KPZ7 1027 aaPredicted RBP13.95□□□□□ -0.18
HMGB1P48-201ENST00000446155 ATXN8OSP0DMR3 200 aa13.8□□□□□ -0.2
HMGB1P48-201ENST00000446155 RNF39Q9H2S5 420 aa13.78□□□□□ -0.2
HMGB1P48-201ENST00000446155 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
HMGB1P48-201ENST00000446155 HNRNPUL2Q1KMD3 747 aaKnown RBP13.75□□□□□ -0.21
HMGB1P48-201ENST00000446155 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
HMGB1P48-201ENST00000446155 ATF5Q9Y2D1 282 aaPredicted RBP13.65□□□□□ -0.22
HMGB1P48-201ENST00000446155 C1QBPQ07021 282 aaKnown RBP13.59□□□□□ -0.23
HMGB1P48-201ENST00000446155 APLP2Q06481 763 aa13.54□□□□□ -0.24
HMGB1P48-201ENST00000446155 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
HMGB1P48-201ENST00000446155 ZNF219Q9P2Y4 722 aaPredicted RBP13.38□□□□□ -0.27
HMGB1P48-201ENST00000446155 CAPN15O75808 1086 aa13.34□□□□□ -0.27
HMGB1P48-201ENST00000446155 TRHP20396 242 aaPredicted RBP13.32□□□□□ -0.28
HMGB1P48-201ENST00000446155 CACNB1Q02641 598 aaPredicted RBP13.2□□□□□ -0.3
HMGB1P48-201ENST00000446155 POLA2Q14181 598 aa13.18□□□□□ -0.3
HMGB1P48-201ENST00000446155 DSG3P32926 999 aa13.16□□□□□ -0.3
HMGB1P48-201ENST00000446155 ABCB7O75027 752 aa13.12□□□□□ -0.31
HMGB1P48-201ENST00000446155 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
HMGB1P48-201ENST00000446155 FKBP8Q14318 412 aa12.98□□□□□ -0.33
HMGB1P48-201ENST00000446155 FBLN2P98095 1184 aa12.97□□□□□ -0.33
HMGB1P48-201ENST00000446155 ZBTB12Q9Y330 459 aaPredicted RBP12.97□□□□□ -0.33
HMGB1P48-201ENST00000446155 SPDYE4A6NLX3 237 aa12.8□□□□□ -0.36
HMGB1P48-201ENST00000446155 OSCARQ8IYS5 282 aa12.74□□□□□ -0.37
HMGB1P48-201ENST00000446155 PROM2Q8N271 834 aa12.74□□□□□ -0.37
HMGB1P48-201ENST00000446155 SPDYE2BA6NHP3 402 aa12.67□□□□□ -0.38
HMGB1P48-201ENST00000446155 SPDYE6P0CI01 402 aa12.67□□□□□ -0.38
HMGB1P48-201ENST00000446155 SPDYE2Q495Y8 402 aa12.67□□□□□ -0.38
HMGB1P48-201ENST00000446155 SSUH2Q9Y2M2 353 aa12.64□□□□□ -0.39
HMGB1P48-201ENST00000446155 ZNF692Q9BU19 519 aaPredicted RBP12.6□□□□□ -0.39
HMGB1P48-201ENST00000446155 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
HMGB1P48-201ENST00000446155 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
HMGB1P48-201ENST00000446155 FBXO3Q9UK99 471 aa12.45□□□□□ -0.42
HMGB1P48-201ENST00000446155 AKT1S1Q96B36 256 aa12.4□□□□□ -0.42
HMGB1P48-201ENST00000446155 VASPP50552 380 aaPredicted RBP12.33□□□□□ -0.44
HMGB1P48-201ENST00000446155 REM2Q8IYK8 340 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P48-201ENST00000446155 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
HMGB1P48-201ENST00000446155 SPDYE1Q8NFV5 336 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P48-201ENST00000446155 IFNLR1Q8IU57 520 aaPredicted RBP12.18□□□□□ -0.46
HMGB1P48-201ENST00000446155 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
HMGB1P48-201ENST00000446155 AMER1Q5JTC6 1135 aaPredicted RBP12.15□□□□□ -0.46
HMGB1P48-201ENST00000446155 RTN4Q9NQC3 1192 aaKnown RBP12.15□□□□□ -0.46
HMGB1P48-201ENST00000446155 CLEC11AQ9Y240 323 aa12.1□□□□□ -0.47
HMGB1P48-201ENST00000446155 MIER1Q8N108 512 aa12.07□□□□□ -0.48
HMGB1P48-201ENST00000446155 PLCD3Q8N3E9 789 aa12.06□□□□□ -0.48
HMGB1P48-201ENST00000446155 PRR29P0C7W0 189 aa12.04□□□□□ -0.48
HMGB1P48-201ENST00000446155 CREBZFQ9NS37 354 aa12.02□□□□□ -0.49
HMGB1P48-201ENST00000446155 KLHL34Q8N239 644 aa11.97□□□□□ -0.49
HMGB1P48-201ENST00000446155 SPOCK2Q92563 424 aa11.97□□□□□ -0.49
HMGB1P48-201ENST00000446155 MNX1P50219 401 aaPredicted RBP11.96□□□□□ -0.49
HMGB1P48-201ENST00000446155 PLEKHG5O94827 1062 aa11.94□□□□□ -0.5
HMGB1P48-201ENST00000446155 ZBTB47Q9UFB7 747 aaPredicted RBP11.94□□□□□ -0.5
HMGB1P48-201ENST00000446155 FXR2P51116 673 aaKnown RBP eCLIP11.91□□□□□ -0.5
HMGB1P48-201ENST00000446155 CHRDL2Q6WN34 429 aa11.91□□□□□ -0.5
HMGB1P48-201ENST00000446155 PKD2Q13563 968 aa11.87□□□□□ -0.51
HMGB1P48-201ENST00000446155 NUBP1P53384 320 aa11.85□□□□□ -0.51
HMGB1P48-201ENST00000446155 CHADLQ6NUI6 762 aa11.85□□□□□ -0.51
HMGB1P48-201ENST00000446155 PIP4P2Q8N4L2 257 aa11.82□□□□□ -0.52
HMGB1P48-201ENST00000446155 PRKAR2AP13861 404 aaKnown RBP11.8□□□□□ -0.52
HMGB1P48-201ENST00000446155 FARP1Q9Y4F1 1045 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P48-201ENST00000446155 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
HMGB1P48-201ENST00000446155 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
HMGB1P48-201ENST00000446155 CIZ1Q9ULV3 898 aaPredicted RBP11.7□□□□□ -0.54
HMGB1P48-201ENST00000446155 GSE1Q14687 1217 aa11.69□□□□□ -0.54
HMGB1P48-201ENST00000446155 ECM2O94769 699 aaPredicted RBP11.67□□□□□ -0.54
HMGB1P48-201ENST00000446155 FAM212AQ96EL1 285 aa11.67□□□□□ -0.54
HMGB1P48-201ENST00000446155 TRIM41Q8WV44 630 aa11.66□□□□□ -0.54
HMGB1P48-201ENST00000446155 DCAF8Q5TAQ9 597 aa11.64□□□□□ -0.55
HMGB1P48-201ENST00000446155 RGL2O15211 777 aa11.61□□□□□ -0.55
HMGB1P48-201ENST00000446155 CHRM1P11229 460 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms