RNA–Protein interactions for RNA: ENST00000553649.2

SMARCE1P3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3, humanhuman

BASIC

Gene SMARCE1P3, Length 1,231 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1P3-201ENST00000553649 AEBP2Q6ZN18 517 aaPredicted RBP24.78■■□□□ 1.56
SMARCE1P3-201ENST00000553649 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
SMARCE1P3-201ENST00000553649 SENP3Q9H4L4 574 aaPredicted RBP21.02■□□□□ 0.96
SMARCE1P3-201ENST00000553649 PHF23Q9BUL5 403 aaPredicted RBP20.78■□□□□ 0.92
SMARCE1P3-201ENST00000553649 FOXD1Q16676 465 aa19.74■□□□□ 0.75
SMARCE1P3-201ENST00000553649 POTEDQ86YR6 584 aa18.9■□□□□ 0.62
SMARCE1P3-201ENST00000553649 MSH5O43196 834 aa18.46■□□□□ 0.55
SMARCE1P3-201ENST00000553649 PIAS4Q8N2W9 510 aaPredicted RBP18.29■□□□□ 0.52
SMARCE1P3-201ENST00000553649 PPP6R1Q9UPN7 881 aa18.28■□□□□ 0.52
SMARCE1P3-201ENST00000553649 PLPPR3Q6T4P5 718 aa18.26■□□□□ 0.51
SMARCE1P3-201ENST00000553649 ADRA2BP18089 450 aa18.16■□□□□ 0.5
SMARCE1P3-201ENST00000553649 MAPK8IP2Q13387 824 aaPredicted RBP16.81■□□□□ 0.28
SMARCE1P3-201ENST00000553649 DMRT2Q9Y5R5 561 aa16.67■□□□□ 0.26
SMARCE1P3-201ENST00000553649 SCAF1Q9H7N4 1312 aaKnown RBP16.43■□□□□ 0.22
SMARCE1P3-201ENST00000553649 CACNB1Q02641 598 aaPredicted RBP16.07■□□□□ 0.16
SMARCE1P3-201ENST00000553649 PPP4R3CPQ6ZMV5 832 aa16.02■□□□□ 0.16
SMARCE1P3-201ENST00000553649 DCAF8L1A6NGE4 600 aa15.95■□□□□ 0.14
SMARCE1P3-201ENST00000553649 HOXD11P31277 338 aaPredicted RBP15.93■□□□□ 0.14
SMARCE1P3-201ENST00000553649 RNF39Q9H2S5 420 aa15.81■□□□□ 0.12
SMARCE1P3-201ENST00000553649 CNKSR2Q8WXI2 1034 aa15.75■□□□□ 0.11
SMARCE1P3-201ENST00000553649 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
SMARCE1P3-201ENST00000553649 C1QBPQ07021 282 aaKnown RBP15.49■□□□□ 0.07
SMARCE1P3-201ENST00000553649 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
SMARCE1P3-201ENST00000553649 NCBP3Q53F19 620 aaKnown RBP15.19■□□□□ 0.02
SMARCE1P3-201ENST00000553649 NPM3O75607 178 aaKnown RBP15.12■□□□□ 0.01
SMARCE1P3-201ENST00000553649 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.12■□□□□ 0.01
SMARCE1P3-201ENST00000553649 U3KPZ7 1027 aaPredicted RBP14.86□□□□□ -0.03
SMARCE1P3-201ENST00000553649 SPINK5Q9NQ38 1064 aaPredicted RBP14.76□□□□□ -0.05
SMARCE1P3-201ENST00000553649 DSG3P32926 999 aa14.71□□□□□ -0.05
SMARCE1P3-201ENST00000553649 POTEHQ6S545 545 aa14.68□□□□□ -0.06
SMARCE1P3-201ENST00000553649 CAPN15O75808 1086 aa14.65□□□□□ -0.06
SMARCE1P3-201ENST00000553649 KCNA4P22459 653 aa14.57□□□□□ -0.08
SMARCE1P3-201ENST00000553649 SLC4A2P04920 1241 aa14.56□□□□□ -0.08
SMARCE1P3-201ENST00000553649 NISCHQ9Y2I1 1504 aa14.38□□□□□ -0.11
SMARCE1P3-201ENST00000553649 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
SMARCE1P3-201ENST00000553649 ABCB7O75027 752 aa14.34□□□□□ -0.11
SMARCE1P3-201ENST00000553649 ZNF219Q9P2Y4 722 aaPredicted RBP14.25□□□□□ -0.13
SMARCE1P3-201ENST00000553649 APLP2Q06481 763 aa14.19□□□□□ -0.14
SMARCE1P3-201ENST00000553649 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
SMARCE1P3-201ENST00000553649 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
SMARCE1P3-201ENST00000553649 SAMD1Q6SPF0 538 aaPredicted RBP14.11□□□□□ -0.15
SMARCE1P3-201ENST00000553649 POLA2Q14181 598 aa13.92□□□□□ -0.18
SMARCE1P3-201ENST00000553649 MYCNP04198 464 aaPredicted RBP13.91□□□□□ -0.18
SMARCE1P3-201ENST00000553649 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
SMARCE1P3-201ENST00000553649 ABCC9O60706 1549 aa13.9□□□□□ -0.18
SMARCE1P3-201ENST00000553649 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
SMARCE1P3-201ENST00000553649 ATF5Q9Y2D1 282 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1P3-201ENST00000553649 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
SMARCE1P3-201ENST00000553649 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
SMARCE1P3-201ENST00000553649 AKT1S1Q96B36 256 aa13.58□□□□□ -0.24
SMARCE1P3-201ENST00000553649 REM2Q8IYK8 340 aaPredicted RBP13.51□□□□□ -0.25
SMARCE1P3-201ENST00000553649 OSCARQ8IYS5 282 aa13.5□□□□□ -0.25
SMARCE1P3-201ENST00000553649 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1P3-201ENST00000553649 PIP4P2Q8N4L2 257 aa13.46□□□□□ -0.25
SMARCE1P3-201ENST00000553649 SP7Q8TDD2 431 aaPredicted RBP13.46□□□□□ -0.25
SMARCE1P3-201ENST00000553649 ZBTB22O15209 634 aa13.45□□□□□ -0.26
SMARCE1P3-201ENST00000553649 PITPNM1O00562 1244 aa13.38□□□□□ -0.27
SMARCE1P3-201ENST00000553649 FXR2P51116 673 aaKnown RBP eCLIP13.32□□□□□ -0.28
SMARCE1P3-201ENST00000553649 HAX1O00165 279 aa13.24□□□□□ -0.29
SMARCE1P3-201ENST00000553649 EVX2Q03828 476 aa13.21□□□□□ -0.29
SMARCE1P3-201ENST00000553649 DNAJC5Q9H3Z4 198 aa13.2□□□□□ -0.3
SMARCE1P3-201ENST00000553649 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
SMARCE1P3-201ENST00000553649 CCDC180Q9P1Z9 1646 aa13.12□□□□□ -0.31
SMARCE1P3-201ENST00000553649 SPDYE2BA6NHP3 402 aa13.11□□□□□ -0.31
SMARCE1P3-201ENST00000553649 SPDYE6P0CI01 402 aa13.11□□□□□ -0.31
SMARCE1P3-201ENST00000553649 SPDYE2Q495Y8 402 aa13.11□□□□□ -0.31
SMARCE1P3-201ENST00000553649 MKRN4PQ13434 485 aaPredicted RBP13.1□□□□□ -0.31
SMARCE1P3-201ENST00000553649 FBLN2P98095 1184 aa13.05□□□□□ -0.32
SMARCE1P3-201ENST00000553649 PRKAR2AP13861 404 aaKnown RBP13□□□□□ -0.33
SMARCE1P3-201ENST00000553649 CLEC11AQ9Y240 323 aa12.97□□□□□ -0.33
SMARCE1P3-201ENST00000553649 SSUH2Q9Y2M2 353 aa12.97□□□□□ -0.33
SMARCE1P3-201ENST00000553649 SPDYE1Q8NFV5 336 aaPredicted RBP12.95□□□□□ -0.34
SMARCE1P3-201ENST00000553649 ZNF692Q9BU19 519 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1P3-201ENST00000553649 C19orf67A6NJJ6 358 aa12.91□□□□□ -0.34
SMARCE1P3-201ENST00000553649 CHADLQ6NUI6 762 aa12.84□□□□□ -0.35
SMARCE1P3-201ENST00000553649 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMARCE1P3-201ENST00000553649 RB1CC1Q8TDY2 1594 aa12.84□□□□□ -0.35
SMARCE1P3-201ENST00000553649 GABBR2O75899 941 aa12.8□□□□□ -0.36
SMARCE1P3-201ENST00000553649 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
SMARCE1P3-201ENST00000553649 LHX8Q68G74 356 aa12.63□□□□□ -0.39
SMARCE1P3-201ENST00000553649 CECR2Q9BXF3 1484 aa12.61□□□□□ -0.39
SMARCE1P3-201ENST00000553649 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
SMARCE1P3-201ENST00000553649 NACADO15069 1562 aa12.58□□□□□ -0.4
SMARCE1P3-201ENST00000553649 BICRAQ9NZM4 1560 aa12.57□□□□□ -0.4
SMARCE1P3-201ENST00000553649 FARP1Q9Y4F1 1045 aaPredicted RBP12.57□□□□□ -0.4
SMARCE1P3-201ENST00000553649 CD44P16070 742 aaKnown RBP12.55□□□□□ -0.4
SMARCE1P3-201ENST00000553649 CSRNP3Q8WYN3 585 aa12.5□□□□□ -0.41
SMARCE1P3-201ENST00000553649 CC2D2AQ9P2K1 1620 aa12.49□□□□□ -0.41
SMARCE1P3-201ENST00000553649 UNC13AQ9UPW8 1703 aa12.48□□□□□ -0.41
SMARCE1P3-201ENST00000553649 PLSCR2Q9NRY7 297 aa12.4□□□□□ -0.42
SMARCE1P3-201ENST00000553649 CREBZFQ9NS37 354 aa12.39□□□□□ -0.43
SMARCE1P3-201ENST00000553649 ZNF579Q8NAF0 562 aaKnown RBP12.35□□□□□ -0.43
SMARCE1P3-201ENST00000553649 CLCN6P51797 869 aa12.34□□□□□ -0.43
SMARCE1P3-201ENST00000553649 DCAF8L2P0C7V8 631 aa12.33□□□□□ -0.44
SMARCE1P3-201ENST00000553649 ZRANB1Q9UGI0 708 aa12.33□□□□□ -0.44
SMARCE1P3-201ENST00000553649 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
SMARCE1P3-201ENST00000553649 DCBLD2Q96PD2 775 aa12.3□□□□□ -0.44
SMARCE1P3-201ENST00000553649 SHROOM4Q9ULL8 1493 aa12.29□□□□□ -0.44
SMARCE1P3-201ENST00000553649 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
SMARCE1P3-201ENST00000553649 CUX2O14529 1486 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms