Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 TMEM179-206ENST00000616017 1645 ntBASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 CROCCP5-201ENST00000436658 830 ntBASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 AC092666.2-201ENST00000613287 246 ntBASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS9D1Q9Y2B5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 BX276092.2-201ENST00000417668 665 ntBASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS9D1Q9Y2B5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS9D1Q9Y2B5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 AL691432.2-201ENST00000607222 2038 ntBASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS9D1Q9Y2B5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
VPS9D1Q9Y2B5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS9D1Q9Y2B5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms