Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 AP001271.2-201ENST00000624018 1556 ntBASIC19.83■□□□□ 0.77
SSU72Q9NP77 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.83■□□□□ 0.77
SSU72Q9NP77 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSU72Q9NP77 AC096631.2-201ENST00000436136 790 ntBASIC19.83■□□□□ 0.77
SSU72Q9NP77 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.83■□□□□ 0.77
SSU72Q9NP77 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.83■□□□□ 0.77
SSU72Q9NP77 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 PTBP1P-201ENST00000554374 1601 ntBASIC19.83■□□□□ 0.76
SSU72Q9NP77 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
SSU72Q9NP77 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSU72Q9NP77 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.82■□□□□ 0.76
SSU72Q9NP77 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSU72Q9NP77 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSU72Q9NP77 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
SSU72Q9NP77 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 AL031432.3-201ENST00000607698 485 ntBASIC19.8■□□□□ 0.76
SSU72Q9NP77 MIR6084-201ENST00000622012 110 ntBASIC19.8■□□□□ 0.76
SSU72Q9NP77 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SSU72Q9NP77 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSU72Q9NP77 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms