Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SMUG1P1-201ENST00000590640 811 ntBASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 NTF6G-201ENST00000591094 616 ntBASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 AC093484.2-201ENST00000580996 2166 ntBASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.44■□□□□ 0.54
ZNF540Q8NDQ6 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 AC055733.4-201ENST00000638462 1354 ntBASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.43■□□□□ 0.54
ZNF540Q8NDQ6 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 RARRES2P11-201ENST00000635158 484 ntBASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
ZNF540Q8NDQ6 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms