Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 AL031963.3-201ENST00000606441 850 ntBASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 MIR1238-201ENST00000408483 83 ntBASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 KRT8P20-201ENST00000423953 1409 ntBASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS3Q8IXF0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 NIFKP9-201ENST00000419265 221 ntBASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 AC005363.2-201ENST00000618631 242 ntBASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 AC092865.7-201ENST00000641832 219 ntBASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS3Q8IXF0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 KSR1P1-201ENST00000446298 240 ntBASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 KRT18P35-201ENST00000510488 1269 ntBASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CR392000.1-201ENST00000624770 1228 ntBASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS3Q8IXF0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS3Q8IXF0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS3Q8IXF0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms