Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 AC009113.1-201ENST00000570267 2443 ntBASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28AQ8IWP9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 FP325331.1-202ENST00000623531 1380 ntBASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28AQ8IWP9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 AC093484.2-201ENST00000580996 2166 ntBASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 AL031848.2-201ENST00000607670 837 ntBASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 C17orf82-201ENST00000623772 1530 ntBASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28AQ8IWP9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC28AQ8IWP9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms