Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF111Q6ZNA4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
RNF111Q6ZNA4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 AC080038.1-201ENST00000611274 1154 ntBASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
RNF111Q6ZNA4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 RBM17P2-201ENST00000616397 1405 ntBASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF111Q6ZNA4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 TERF1P5-201ENST00000477545 1207 ntBASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 AC243732.1-201ENST00000612648 864 ntBASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.36■□□□□ 0.69
RNF111Q6ZNA4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 DUX4L16-201ENST00000555130 1264 ntBASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 RARRES2P11-201ENST00000635158 484 ntBASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 AC013268.1-206ENST00000638368 961 ntBASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 AC112229.1-201ENST00000639295 961 ntBASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF111Q6ZNA4 AC093484.2-201ENST00000580996 2166 ntBASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF111Q6ZNA4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms