Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC011298.3-201ENST00000615796 283 ntBASIC13.93□□□□□ -0.18
CKS1BP61024 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CKS1BP61024 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CKS1BP61024 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CKS1BP61024 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 AP000997.3-201ENST00000623333 2250 ntBASIC13.93□□□□□ -0.18
CKS1BP61024 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC13.93□□□□□ -0.18
CKS1BP61024 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 GABARAPL3-202ENST00000624044 1851 ntBASIC13.93□□□□□ -0.18
CKS1BP61024 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CKS1BP61024 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CKS1BP61024 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC13.92□□□□□ -0.18
CKS1BP61024 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC13.92□□□□□ -0.18
CKS1BP61024 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC13.92□□□□□ -0.18
CKS1BP61024 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
CKS1BP61024 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CKS1BP61024 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC13.92□□□□□ -0.18
CKS1BP61024 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 SLC47A1P1-202ENST00000449666 945 ntBASIC13.92□□□□□ -0.18
CKS1BP61024 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC13.92□□□□□ -0.18
CKS1BP61024 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CKS1BP61024 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CKS1BP61024 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
CKS1BP61024 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC13.92□□□□□ -0.18
CKS1BP61024 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC13.92□□□□□ -0.18
CKS1BP61024 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CKS1BP61024 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
CKS1BP61024 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CKS1BP61024 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CKS1BP61024 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 AL391005.1-201ENST00000623953 2435 ntBASIC13.91□□□□□ -0.18
CKS1BP61024 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 AC121338.2-201ENST00000622535 1744 ntBASIC13.91□□□□□ -0.18
CKS1BP61024 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC13.91□□□□□ -0.18
CKS1BP61024 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC13.91□□□□□ -0.18
CKS1BP61024 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 SF1-220ENST00000626028 704 ntTSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 RASSF1-AS1-201ENST00000629828 790 ntBASIC13.91□□□□□ -0.18
CKS1BP61024 AL035685.1-201ENST00000636663 812 ntBASIC13.91□□□□□ -0.18
CKS1BP61024 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CKS1BP61024 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC13.91□□□□□ -0.18
CKS1BP61024 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CKS1BP61024 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CKS1BP61024 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CKS1BP61024 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CKS1BP61024 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.9□□□□□ -0.18
CKS1BP61024 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms