Protein–RNA interactions for Protein: P54860

UFD2, E4 ubiquitin-protein ligase UFD2, yeastyeast

Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD2P54860 tM(CAU)Q2tM(CAU)Q2 78 nt1.88□□□□□ -2.11
UFD2P54860 YLR232WYLR232W 348 nt1.88□□□□□ -2.11
UFD2P54860 GEA2YEL022W 4380 nt1.87□□□□□ -2.11
UFD2P54860 YDL247W-AYDL247W-A 75 nt1.87□□□□□ -2.11
UFD2P54860 SEC3YER008C 4011 nt1.85□□□□□ -2.11
UFD2P54860 BST1YFL025C 3090 nt1.85□□□□□ -2.11
UFD2P54860 YBR200W-AYBR200W-A 165 nt1.84□□□□□ -2.11
UFD2P54860 COG6YNL041C 2520 nt1.84□□□□□ -2.12
UFD2P54860 SAC3YDR159W 3906 nt1.84□□□□□ -2.12
UFD2P54860 YGL041C-BYGL041C-B 183 nt1.83□□□□□ -2.12
UFD2P54860 VPS15YBR097W 4365 nt1.82□□□□□ -2.12
UFD2P54860 NUP188YML103C 4968 nt1.82□□□□□ -2.12
UFD2P54860 NUP192YJL039C 5052 nt1.82□□□□□ -2.12
UFD2P54860 RCO1YMR075W 2055 nt1.82□□□□□ -2.12
UFD2P54860 NUP145YGL092W 3954 nt1.82□□□□□ -2.12
UFD2P54860 ROM2YLR371W 4071 nt1.81□□□□□ -2.12
UFD2P54860 YDR210WYDR210W 228 nt1.8□□□□□ -2.12
UFD2P54860 CDC25YLR310C 4770 nt1.8□□□□□ -2.12
UFD2P54860 DNF3YMR162C 4971 nt1.79□□□□□ -2.12
UFD2P54860 CHS1YNL192W 3396 nt1.78□□□□□ -2.12
UFD2P54860 CAT8YMR280C 4302 nt1.78□□□□□ -2.12
UFD2P54860 tT(UGU)HtT(UGU)H 72 nt1.78□□□□□ -2.12
UFD2P54860 KAP120YPL125W 3099 nt1.78□□□□□ -2.12
UFD2P54860 AZF1YOR113W 2745 nt1.77□□□□□ -2.13
UFD2P54860 BRR2YER172C 6492 nt1.77□□□□□ -2.13
UFD2P54860 RAD9YDR217C 3930 nt1.77□□□□□ -2.13
UFD2P54860 YJL127W-AYJL127W-A 117 nt1.76□□□□□ -2.13
UFD2P54860 CDC39YCR093W 6327 nt1.76□□□□□ -2.13
UFD2P54860 EST2YLR318W 2655 nt1.75□□□□□ -2.13
UFD2P54860 YMR247W-AYMR247W-A 144 nt1.74□□□□□ -2.13
UFD2P54860 SEC8YPR055W 3198 nt1.73□□□□□ -2.13
UFD2P54860 RPM2YML091C 3609 nt1.73□□□□□ -2.13
UFD2P54860 YGR146C-AYGR146C-A 162 nt1.72□□□□□ -2.13
UFD2P54860 BIR1YJR089W 2865 nt1.71□□□□□ -2.14
UFD2P54860 FIG2YCR089W 4830 nt1.7□□□□□ -2.14
UFD2P54860 SEC1YDR164C 2175 nt1.7□□□□□ -2.14
UFD2P54860 MEC1YBR136W 7107 nt1.69□□□□□ -2.14
UFD2P54860 SXM1YDR395W 2835 nt1.67□□□□□ -2.14
UFD2P54860 YDL073WYDL073W 2955 nt1.66□□□□□ -2.14
UFD2P54860 PRP16YKR086W 3216 nt1.66□□□□□ -2.14
UFD2P54860 tN(GUU)QtN(GUU)Q 71 nt1.66□□□□□ -2.14
UFD2P54860 YLR399W-AYLR399W-A 105 nt1.66□□□□□ -2.14
UFD2P54860 YNL266WYNL266W 420 nt1.66□□□□□ -2.14
UFD2P54860 YPR160W-AYPR160W-A 81 nt1.65□□□□□ -2.15
UFD2P54860 MSN5YDR335W 3675 nt1.65□□□□□ -2.15
UFD2P54860 YBR072C-AYBR072C-A 162 nt1.63□□□□□ -2.15
UFD2P54860 CLU1YMR012W 3834 nt1.63□□□□□ -2.15
UFD2P54860 BEM3YPL115C 3387 nt1.62□□□□□ -2.15
UFD2P54860 snR81snR81 201 nt1.62□□□□□ -2.15
UFD2P54860 tS(GCU)Q1tS(GCU)Q1 86 nt1.61□□□□□ -2.15
UFD2P54860 SPC110YDR356W 2835 nt1.61□□□□□ -2.15
UFD2P54860 IRA1YBR140C 9279 nt1.6□□□□□ -2.15
UFD2P54860 MSH3YCR092C 3057 nt1.6□□□□□ -2.15
UFD2P54860 CCH1YGR217W 6120 nt1.58□□□□□ -2.16
UFD2P54860 YSP1YHR155W 3687 nt1.58□□□□□ -2.16
UFD2P54860 SSK2YNR031C 4740 nt1.57□□□□□ -2.16
UFD2P54860 PET127YOR017W 2403 nt1.57□□□□□ -2.16
UFD2P54860 YAL037C-AYAL037C-A 93 nt1.56□□□□□ -2.16
UFD2P54860 tH(GUG)E1tH(GUG)E1 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)E2tH(GUG)E2 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)G1tH(GUG)G1 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)G2tH(GUG)G2 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)HtH(GUG)H 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)KtH(GUG)K 72 nt1.55□□□□□ -2.16
UFD2P54860 tH(GUG)MtH(GUG)M 72 nt1.55□□□□□ -2.16
UFD2P54860 tQ(UUG)E2tQ(UUG)E2 72 nt1.55□□□□□ -2.16
UFD2P54860 YIL142C-AYIL142C-A 333 nt1.55□□□□□ -2.16
UFD2P54860 UBP3YER151C 2739 nt1.54□□□□□ -2.16
UFD2P54860 NNF2YGR089W 2811 nt1.52□□□□□ -2.17
UFD2P54860 HKR1YDR420W 5409 nt1.51□□□□□ -2.17
UFD2P54860 ULP2YIL031W 3105 nt1.51□□□□□ -2.17
UFD2P54860 FYV8YGR196C 2454 nt1.5□□□□□ -2.17
UFD2P54860 GLG1YKR058W 1851 nt1.5□□□□□ -2.17
UFD2P54860 YGR130CYGR130C 2451 nt1.49□□□□□ -2.17
UFD2P54860 PIK1YNL267W 3201 nt1.49□□□□□ -2.17
UFD2P54860 LAA1YJL207C 6045 nt1.49□□□□□ -2.17
UFD2P54860 YLL066W-BYLL066W-B 171 nt1.46□□□□□ -2.18
UFD2P54860 YOL083C-AYOL083C-A 141 nt1.45□□□□□ -2.18
UFD2P54860 SEC10YLR166C 2616 nt1.45□□□□□ -2.18
UFD2P54860 YBR196C-AYBR196C-A 150 nt1.44□□□□□ -2.18
UFD2P54860 snR45snR45 172 nt1.44□□□□□ -2.18
UFD2P54860 SPT7YBR081C 3999 nt1.44□□□□□ -2.18
UFD2P54860 YBL071C-BYBL071C-B 99 nt1.41□□□□□ -2.18
UFD2P54860 IML1YJR138W 4755 nt1.4□□□□□ -2.19
UFD2P54860 snR62snR62 100 nt1.38□□□□□ -2.19
UFD2P54860 RPS26AYGL189C 360 nt1.36□□□□□ -2.19
UFD2P54860 SIP4YJL089W 2490 nt1.34□□□□□ -2.19
UFD2P54860 tV(UAC)BtV(UAC)B 74 nt1.34□□□□□ -2.19
UFD2P54860 tV(UAC)DtV(UAC)D 74 nt1.34□□□□□ -2.19
UFD2P54860 YLL006W-AYLL006W-A 177 nt1.34□□□□□ -2.19
UFD2P54860 HUG1YML058W-A 207 nt1.34□□□□□ -2.19
UFD2P54860 YPL060C-AYPL060C-A 3315 nt1.34□□□□□ -2.2
UFD2P54860 YNL284C-BYNL284C-B 5268 nt1.33□□□□□ -2.2
UFD2P54860 tD(GUC)QtD(GUC)Q 75 nt1.31□□□□□ -2.2
UFD2P54860 YLR286W-AYLR286W-A 135 nt1.31□□□□□ -2.2
UFD2P54860 EST1YLR233C 2100 nt1.3□□□□□ -2.2
UFD2P54860 RKR1YMR247C 4689 nt1.3□□□□□ -2.2
UFD2P54860 CSE1YGL238W 2883 nt1.29□□□□□ -2.2
UFD2P54860 YOL164W-AYOL164W-A 183 nt1.29□□□□□ -2.2
UFD2P54860 snR69snR69 101 nt1.27□□□□□ -2.21
Retrieved 100 of 7,029 protein–RNA pairs in 11.9 ms