Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PTPN9P43378 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PTPN9P43378 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.81■□□□□ 0.92
PTPN9P43378 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.81■□□□□ 0.92
PTPN9P43378 AL390719.1-204ENST00000412397 1219 ntBASIC20.81■□□□□ 0.92
PTPN9P43378 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.81■□□□□ 0.92
PTPN9P43378 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.81■□□□□ 0.92
PTPN9P43378 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 AC060766.5-201ENST00000590539 871 ntBASIC20.81■□□□□ 0.92
PTPN9P43378 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.8■□□□□ 0.92
PTPN9P43378 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PTPN9P43378 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.8■□□□□ 0.92
PTPN9P43378 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.8■□□□□ 0.92
PTPN9P43378 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.8■□□□□ 0.92
PTPN9P43378 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.8■□□□□ 0.92
PTPN9P43378 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 AC092368.3-202ENST00000574180 1591 ntBASIC20.8■□□□□ 0.92
PTPN9P43378 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.8■□□□□ 0.92
PTPN9P43378 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN9P43378 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.79■□□□□ 0.92
PTPN9P43378 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN9P43378 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.79■□□□□ 0.92
PTPN9P43378 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.79■□□□□ 0.92
PTPN9P43378 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN9P43378 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.79■□□□□ 0.92
PTPN9P43378 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.79■□□□□ 0.92
PTPN9P43378 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.79■□□□□ 0.92
PTPN9P43378 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN9P43378 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.79■□□□□ 0.92
PTPN9P43378 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN9P43378 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN9P43378 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.78■□□□□ 0.92
PTPN9P43378 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.78■□□□□ 0.92
PTPN9P43378 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PTPN9P43378 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
PTPN9P43378 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.78■□□□□ 0.92
PTPN9P43378 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.78■□□□□ 0.92
PTPN9P43378 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.78■□□□□ 0.92
PTPN9P43378 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.78■□□□□ 0.92
PTPN9P43378 PNMA6B-201ENST00000538162 1200 ntBASIC20.78■□□□□ 0.92
PTPN9P43378 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.78■□□□□ 0.92
PTPN9P43378 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.78■□□□□ 0.92
PTPN9P43378 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.78■□□□□ 0.92
PTPN9P43378 TMEM179-206ENST00000616017 1645 ntBASIC20.78■□□□□ 0.92
PTPN9P43378 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN9P43378 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PTPN9P43378 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PTPN9P43378 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.77■□□□□ 0.92
PTPN9P43378 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.77■□□□□ 0.92
PTPN9P43378 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
PTPN9P43378 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN9P43378 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.77■□□□□ 0.91
PTPN9P43378 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PTPN9P43378 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN9P43378 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PTPN9P43378 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms