Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
RFC4P35249 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
RFC4P35249 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RFC4P35249 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC25.24■■□□□ 1.63
RFC4P35249 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC25.24■■□□□ 1.63
RFC4P35249 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.24■■□□□ 1.63
RFC4P35249 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.24■■□□□ 1.63
RFC4P35249 AL445675.2-201ENST00000620291 557 ntBASIC25.24■■□□□ 1.63
RFC4P35249 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.24■■□□□ 1.63
RFC4P35249 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
RFC4P35249 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RFC4P35249 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RFC4P35249 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RFC4P35249 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RFC4P35249 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
RFC4P35249 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RFC4P35249 PRR31-201ENST00000371629 978 ntTSL 2 BASIC25.23■■□□□ 1.63
RFC4P35249 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RFC4P35249 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC25.23■■□□□ 1.63
RFC4P35249 C1QL1P1-201ENST00000568105 661 ntBASIC25.23■■□□□ 1.63
RFC4P35249 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.23■■□□□ 1.63
RFC4P35249 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
RFC4P35249 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
RFC4P35249 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RFC4P35249 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
RFC4P35249 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.22■■□□□ 1.63
RFC4P35249 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RFC4P35249 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC25.22■■□□□ 1.63
RFC4P35249 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
RFC4P35249 B3GAT3P1-201ENST00000471720 806 ntBASIC25.22■■□□□ 1.63
RFC4P35249 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.22■■□□□ 1.63
RFC4P35249 DGCR10-201ENST00000609839 495 ntBASIC25.22■■□□□ 1.63
RFC4P35249 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RFC4P35249 AC233723.2-201ENST00000623798 2106 ntBASIC25.22■■□□□ 1.63
RFC4P35249 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
RFC4P35249 AP006587.1-201ENST00000534129 1502 ntBASIC25.22■■□□□ 1.63
RFC4P35249 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
RFC4P35249 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC25.21■■□□□ 1.63
RFC4P35249 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC25.21■■□□□ 1.63
RFC4P35249 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RFC4P35249 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.21■■□□□ 1.63
RFC4P35249 AK4P3-201ENST00000418260 669 ntBASIC25.21■■□□□ 1.63
RFC4P35249 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.21■■□□□ 1.63
RFC4P35249 AC128688.1-201ENST00000487626 519 ntBASIC25.21■■□□□ 1.63
RFC4P35249 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.21■■□□□ 1.63
RFC4P35249 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.21■■□□□ 1.63
RFC4P35249 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC25.21■■□□□ 1.63
RFC4P35249 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RFC4P35249 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC25.21■■□□□ 1.63
RFC4P35249 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
RFC4P35249 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC25.2■■□□□ 1.62
RFC4P35249 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
RFC4P35249 CRYGFP-201ENST00000418459 633 ntBASIC25.2■■□□□ 1.62
RFC4P35249 AC011506.1-201ENST00000474329 610 ntBASIC25.2■■□□□ 1.62
RFC4P35249 AC097488.1-201ENST00000507834 756 ntBASIC25.2■■□□□ 1.62
RFC4P35249 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
RFC4P35249 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
RFC4P35249 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.2■■□□□ 1.62
RFC4P35249 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RFC4P35249 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC25.2■■□□□ 1.62
RFC4P35249 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
RFC4P35249 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC25.19■■□□□ 1.62
RFC4P35249 BX664615.1-201ENST00000443558 458 ntBASIC25.19■■□□□ 1.62
RFC4P35249 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.19■■□□□ 1.62
RFC4P35249 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
RFC4P35249 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.19■■□□□ 1.62
RFC4P35249 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 AC121338.2-201ENST00000622535 1744 ntBASIC25.19■■□□□ 1.62
RFC4P35249 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RFC4P35249 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.19■■□□□ 1.62
RFC4P35249 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 AC244015.2-201ENST00000616358 1861 ntBASIC25.18■■□□□ 1.62
RFC4P35249 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.18■■□□□ 1.62
RFC4P35249 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 UPK3BP1-201ENST00000428678 509 ntBASIC25.18■■□□□ 1.62
RFC4P35249 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.18■■□□□ 1.62
RFC4P35249 KRT8P17-201ENST00000453110 1448 ntBASIC25.18■■□□□ 1.62
RFC4P35249 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RFC4P35249 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
RFC4P35249 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.18■■□□□ 1.62
RFC4P35249 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC25.17■■□□□ 1.62
RFC4P35249 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RFC4P35249 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RFC4P35249 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RFC4P35249 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.17■■□□□ 1.62
RFC4P35249 AC022616.7-201ENST00000525383 220 ntBASIC25.17■■□□□ 1.62
RFC4P35249 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC25.17■■□□□ 1.62
RFC4P35249 LINC01238-205ENST00000567549 1107 ntBASIC25.17■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms