Protein–RNA interactions for Protein: P34110

VPS35, Vacuolar protein sorting-associated protein 35, yeastyeast

Predictions only

Length 944 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS35P34110 NUP188YML103C 4968 nt1.8□□□□□ -2.12
VPS35P34110 ASE1YOR058C 2658 nt1.8□□□□□ -2.12
VPS35P34110 NUP145YGL092W 3954 nt1.8□□□□□ -2.12
VPS35P34110 IRA1YBR140C 9279 nt1.79□□□□□ -2.12
VPS35P34110 SEC3YER008C 4011 nt1.78□□□□□ -2.12
VPS35P34110 AZF1YOR113W 2745 nt1.77□□□□□ -2.13
VPS35P34110 snR39BsnR39B 96 nt1.77□□□□□ -2.13
VPS35P34110 TFB5YDR079C-A 219 nt1.76□□□□□ -2.13
VPS35P34110 YDR544CYDR544C 429 nt1.76□□□□□ -2.13
VPS35P34110 CHS1YNL192W 3396 nt1.76□□□□□ -2.13
VPS35P34110 YLR232WYLR232W 348 nt1.75□□□□□ -2.13
VPS35P34110 YNL103W-AYNL103W-A 90 nt1.75□□□□□ -2.13
VPS35P34110 EST2YLR318W 2655 nt1.75□□□□□ -2.13
VPS35P34110 CLU1YMR012W 3834 nt1.74□□□□□ -2.13
VPS35P34110 tM(CAU)Q2tM(CAU)Q2 78 nt1.74□□□□□ -2.13
VPS35P34110 CAT8YMR280C 4302 nt1.74□□□□□ -2.13
VPS35P34110 CDC25YLR310C 4770 nt1.73□□□□□ -2.13
VPS35P34110 ROM2YLR371W 4071 nt1.73□□□□□ -2.13
VPS35P34110 YHR131W-AYHR131W-A 246 nt1.73□□□□□ -2.13
VPS35P34110 BRR2YER172C 6492 nt1.71□□□□□ -2.14
VPS35P34110 CDC39YCR093W 6327 nt1.69□□□□□ -2.14
VPS35P34110 SXM1YDR395W 2835 nt1.69□□□□□ -2.14
VPS35P34110 YMR326CYMR326C 309 nt1.69□□□□□ -2.14
VPS35P34110 MSH3YCR092C 3057 nt1.68□□□□□ -2.14
VPS35P34110 snR61snR61 90 nt1.68□□□□□ -2.14
VPS35P34110 RAD9YDR217C 3930 nt1.68□□□□□ -2.14
VPS35P34110 MSN5YDR335W 3675 nt1.68□□□□□ -2.14
VPS35P34110 STF2YGR008C 255 nt1.67□□□□□ -2.14
VPS35P34110 SSK2YNR031C 4740 nt1.67□□□□□ -2.14
VPS35P34110 SEC8YPR055W 3198 nt1.65□□□□□ -2.14
VPS35P34110 YDR210WYDR210W 228 nt1.62□□□□□ -2.15
VPS35P34110 YHR217CYHR217C 462 nt1.61□□□□□ -2.15
VPS35P34110 YJL127W-AYJL127W-A 117 nt1.61□□□□□ -2.15
VPS35P34110 KAP120YPL125W 3099 nt1.61□□□□□ -2.15
VPS35P34110 PET127YOR017W 2403 nt1.6□□□□□ -2.15
VPS35P34110 COG6YNL041C 2520 nt1.6□□□□□ -2.15
VPS35P34110 YLR399W-AYLR399W-A 105 nt1.6□□□□□ -2.15
VPS35P34110 tQ(UUG)E2tQ(UUG)E2 72 nt1.59□□□□□ -2.15
VPS35P34110 YPR160W-AYPR160W-A 81 nt1.59□□□□□ -2.15
VPS35P34110 PRP16YKR086W 3216 nt1.59□□□□□ -2.16
VPS35P34110 FYV8YGR196C 2454 nt1.59□□□□□ -2.16
VPS35P34110 PIK1YNL267W 3201 nt1.59□□□□□ -2.16
VPS35P34110 CCH1YGR217W 6120 nt1.57□□□□□ -2.16
VPS35P34110 SPC110YDR356W 2835 nt1.57□□□□□ -2.16
VPS35P34110 tN(GUU)QtN(GUU)Q 71 nt1.56□□□□□ -2.16
VPS35P34110 RPM2YML091C 3609 nt1.56□□□□□ -2.16
VPS35P34110 SEC1YDR164C 2175 nt1.54□□□□□ -2.16
VPS35P34110 BEM3YPL115C 3387 nt1.54□□□□□ -2.16
VPS35P34110 YGR146C-AYGR146C-A 162 nt1.54□□□□□ -2.16
VPS35P34110 LAA1YJL207C 6045 nt1.54□□□□□ -2.16
VPS35P34110 RCO1YMR075W 2055 nt1.54□□□□□ -2.16
VPS35P34110 YNL284C-BYNL284C-B 5268 nt1.53□□□□□ -2.17
VPS35P34110 SBH1YER087C-B 249 nt1.52□□□□□ -2.17
VPS35P34110 YGL041C-BYGL041C-B 183 nt1.52□□□□□ -2.17
VPS35P34110 YDL073WYDL073W 2955 nt1.51□□□□□ -2.17
VPS35P34110 YSP1YHR155W 3687 nt1.49□□□□□ -2.17
VPS35P34110 BIR1YJR089W 2865 nt1.49□□□□□ -2.17
VPS35P34110 YGR130CYGR130C 2451 nt1.48□□□□□ -2.17
VPS35P34110 tH(GUG)E1tH(GUG)E1 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)E2tH(GUG)E2 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)G1tH(GUG)G1 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)G2tH(GUG)G2 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)HtH(GUG)H 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)KtH(GUG)K 72 nt1.47□□□□□ -2.17
VPS35P34110 tH(GUG)MtH(GUG)M 72 nt1.47□□□□□ -2.17
VPS35P34110 YNL266WYNL266W 420 nt1.46□□□□□ -2.18
VPS35P34110 IML1YJR138W 4755 nt1.44□□□□□ -2.18
VPS35P34110 UBP3YER151C 2739 nt1.43□□□□□ -2.18
VPS35P34110 HKR1YDR420W 5409 nt1.43□□□□□ -2.18
VPS35P34110 YDL247W-AYDL247W-A 75 nt1.42□□□□□ -2.18
VPS35P34110 YBR072C-AYBR072C-A 162 nt1.42□□□□□ -2.18
VPS35P34110 SPT7YBR081C 3999 nt1.41□□□□□ -2.18
VPS35P34110 GLG1YKR058W 1851 nt1.39□□□□□ -2.19
VPS35P34110 ULP2YIL031W 3105 nt1.38□□□□□ -2.19
VPS35P34110 NNF2YGR089W 2811 nt1.37□□□□□ -2.19
VPS35P34110 tV(UAC)BtV(UAC)B 74 nt1.37□□□□□ -2.19
VPS35P34110 tV(UAC)DtV(UAC)D 74 nt1.37□□□□□ -2.19
VPS35P34110 snR81snR81 201 nt1.33□□□□□ -2.2
VPS35P34110 BUD3YCL014W 4911 nt1.32□□□□□ -2.2
VPS35P34110 NST1YNL091W 3723 nt1.31□□□□□ -2.2
VPS35P34110 SIP4YJL089W 2490 nt1.3□□□□□ -2.2
VPS35P34110 YAL037C-AYAL037C-A 93 nt1.3□□□□□ -2.2
VPS35P34110 HUG1YML058W-A 207 nt1.3□□□□□ -2.2
VPS35P34110 YJR029WYJR029W 5268 nt1.29□□□□□ -2.2
VPS35P34110 YPR137C-BYPR137C-B 5268 nt1.29□□□□□ -2.2
VPS35P34110 YBR196C-AYBR196C-A 150 nt1.28□□□□□ -2.2
VPS35P34110 YLL006W-AYLL006W-A 177 nt1.27□□□□□ -2.21
VPS35P34110 RKR1YMR247C 4689 nt1.27□□□□□ -2.21
VPS35P34110 SEC10YLR166C 2616 nt1.26□□□□□ -2.21
VPS35P34110 tS(GCU)Q1tS(GCU)Q1 86 nt1.26□□□□□ -2.21
VPS35P34110 BEM2YER155C 6504 nt1.23□□□□□ -2.21
VPS35P34110 YPR117WYPR117W 7470 nt1.22□□□□□ -2.21
VPS35P34110 YOL083C-AYOL083C-A 141 nt1.21□□□□□ -2.22
VPS35P34110 SCC2YDR180W 4482 nt1.21□□□□□ -2.22
VPS35P34110 CSE1YGL238W 2883 nt1.19□□□□□ -2.22
VPS35P34110 YPL060C-AYPL060C-A 3315 nt1.15□□□□□ -2.23
VPS35P34110 YIL142C-AYIL142C-A 333 nt1.15□□□□□ -2.23
VPS35P34110 YBL071C-BYBL071C-B 99 nt1.15□□□□□ -2.23
VPS35P34110 EST1YLR233C 2100 nt1.15□□□□□ -2.23
VPS35P34110 NIP1YMR309C 2439 nt1.14□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms