Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BX119927.1-201ENST00000636596 1552 ntBASIC15.2■□□□□ 0.02
HLA-DMBP28068 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 TERF1P5-201ENST00000477545 1207 ntBASIC15.2■□□□□ 0.02
HLA-DMBP28068 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 AC016405.3-201ENST00000607710 860 ntBASIC15.2■□□□□ 0.02
HLA-DMBP28068 AL356652.1-201ENST00000615962 565 ntBASIC15.2■□□□□ 0.02
HLA-DMBP28068 AC010536.3-201ENST00000620306 533 ntBASIC15.2■□□□□ 0.02
HLA-DMBP28068 WWOX-218ENST00000627394 894 ntTSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DMBP28068 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 CYP21A1P-202ENST00000354927 1481 ntBASIC15.18■□□□□ 0.02
HLA-DMBP28068 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DMBP28068 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DMBP28068 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 AC087633.2-202ENST00000565166 1439 ntBASIC15.17■□□□□ 0.02
HLA-DMBP28068 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms