Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.91■□□□□ 0.3
USF1P22415 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
USF1P22415 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.91■□□□□ 0.3
USF1P22415 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.91■□□□□ 0.3
USF1P22415 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
USF1P22415 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.91■□□□□ 0.3
USF1P22415 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 PRKY-204ENST00000533551 1019 ntBASIC16.91■□□□□ 0.3
USF1P22415 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.91■□□□□ 0.3
USF1P22415 LINC01023-201ENST00000606054 436 ntBASIC16.91■□□□□ 0.3
USF1P22415 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
USF1P22415 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.91■□□□□ 0.3
USF1P22415 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF1P22415 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
USF1P22415 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 AL121603.2-201ENST00000557373 2117 ntBASIC16.9■□□□□ 0.3
USF1P22415 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
USF1P22415 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 TSPY7P-201ENST00000431358 1114 ntBASIC16.9■□□□□ 0.3
USF1P22415 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
USF1P22415 AL049637.2-201ENST00000641778 930 ntBASIC16.9■□□□□ 0.3
USF1P22415 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
USF1P22415 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF1P22415 AL049796.1-201ENST00000565336 1766 ntBASIC16.89■□□□□ 0.3
USF1P22415 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
USF1P22415 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.89■□□□□ 0.29
USF1P22415 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.89■□□□□ 0.29
USF1P22415 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.89■□□□□ 0.29
USF1P22415 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.89■□□□□ 0.29
USF1P22415 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 BX088651.1-201ENST00000540551 451 ntBASIC16.89■□□□□ 0.29
USF1P22415 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.89■□□□□ 0.29
USF1P22415 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.89■□□□□ 0.29
USF1P22415 MIR4785-201ENST00000585005 73 ntBASIC16.89■□□□□ 0.29
USF1P22415 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.89■□□□□ 0.29
USF1P22415 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USF1P22415 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF1P22415 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.89■□□□□ 0.29
USF1P22415 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USF1P22415 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
USF1P22415 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.88■□□□□ 0.29
USF1P22415 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.88■□□□□ 0.29
USF1P22415 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.88■□□□□ 0.29
USF1P22415 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.88■□□□□ 0.29
USF1P22415 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.88■□□□□ 0.29
USF1P22415 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.88■□□□□ 0.29
USF1P22415 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.88■□□□□ 0.29
USF1P22415 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.88■□□□□ 0.29
USF1P22415 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.88■□□□□ 0.29
USF1P22415 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.88■□□□□ 0.29
USF1P22415 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF1P22415 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
USF1P22415 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
USF1P22415 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USF1P22415 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms