Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 AC009237.14-201ENST00000609975 1594 ntBASIC20.03■□□□□ 0.8
SHOX2O60902 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.03■□□□□ 0.8
SHOX2O60902 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.03■□□□□ 0.8
SHOX2O60902 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.03■□□□□ 0.8
SHOX2O60902 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 AC006333.2-201ENST00000607957 2099 ntBASIC20.03■□□□□ 0.8
SHOX2O60902 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.02■□□□□ 0.8
SHOX2O60902 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.02■□□□□ 0.8
SHOX2O60902 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.02■□□□□ 0.8
SHOX2O60902 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SHOX2O60902 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.02■□□□□ 0.8
SHOX2O60902 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.02■□□□□ 0.8
SHOX2O60902 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHOX2O60902 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
SHOX2O60902 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHOX2O60902 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.01■□□□□ 0.79
SHOX2O60902 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.01■□□□□ 0.79
SHOX2O60902 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SHOX2O60902 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.01■□□□□ 0.79
SHOX2O60902 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.01■□□□□ 0.79
SHOX2O60902 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 WIZP1-201ENST00000531444 2299 ntBASIC20.01■□□□□ 0.79
SHOX2O60902 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHOX2O60902 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
SHOX2O60902 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SHOX2O60902 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 AP005435.1-201ENST00000529293 1178 ntBASIC20■□□□□ 0.79
SHOX2O60902 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20■□□□□ 0.79
SHOX2O60902 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20■□□□□ 0.79
SHOX2O60902 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
SHOX2O60902 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20■□□□□ 0.79
SHOX2O60902 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20■□□□□ 0.79
SHOX2O60902 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SHOX2O60902 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20■□□□□ 0.79
SHOX2O60902 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.99■□□□□ 0.79
SHOX2O60902 AP004607.4-201ENST00000530158 1459 ntBASIC19.99■□□□□ 0.79
SHOX2O60902 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.99■□□□□ 0.79
SHOX2O60902 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
SHOX2O60902 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 MIR6724-1-201ENST00000616420 92 ntBASIC19.99■□□□□ 0.79
SHOX2O60902 MIR6724-2-201ENST00000616483 92 ntBASIC19.99■□□□□ 0.79
SHOX2O60902 MIR6724-4-201ENST00000617390 92 ntBASIC19.99■□□□□ 0.79
SHOX2O60902 MIR6724-3-201ENST00000622482 92 ntBASIC19.99■□□□□ 0.79
SHOX2O60902 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SHOX2O60902 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.99■□□□□ 0.79
SHOX2O60902 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.99■□□□□ 0.79
SHOX2O60902 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHOX2O60902 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms