Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.86■■□□□ 1.09
CLDN3O15551 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.86■■□□□ 1.09
CLDN3O15551 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.86■■□□□ 1.09
CLDN3O15551 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.86■■□□□ 1.09
CLDN3O15551 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.86■■□□□ 1.09
CLDN3O15551 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.86■■□□□ 1.09
CLDN3O15551 TMEM191A-211ENST00000637163 1067 ntBASIC21.86■■□□□ 1.09
CLDN3O15551 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.86■■□□□ 1.09
CLDN3O15551 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CLDN3O15551 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CLDN3O15551 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.85■■□□□ 1.09
CLDN3O15551 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.85■■□□□ 1.09
CLDN3O15551 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CLDN3O15551 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.85■■□□□ 1.09
CLDN3O15551 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.85■■□□□ 1.09
CLDN3O15551 AC128676.1-201ENST00000454392 318 ntBASIC21.85■■□□□ 1.09
CLDN3O15551 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.85■■□□□ 1.09
CLDN3O15551 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CLDN3O15551 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.85■■□□□ 1.09
CLDN3O15551 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CLDN3O15551 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
CLDN3O15551 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.85■■□□□ 1.09
CLDN3O15551 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLDN3O15551 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CLDN3O15551 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.84■■□□□ 1.09
CLDN3O15551 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLDN3O15551 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.84■■□□□ 1.09
CLDN3O15551 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.84■■□□□ 1.09
CLDN3O15551 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.84■■□□□ 1.09
CLDN3O15551 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.84■■□□□ 1.09
CLDN3O15551 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 AC073648.6-201ENST00000641589 218 ntBASIC21.84■■□□□ 1.09
CLDN3O15551 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
CLDN3O15551 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLDN3O15551 GABARAPL3-202ENST00000624044 1851 ntBASIC21.83■■□□□ 1.09
CLDN3O15551 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
CLDN3O15551 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.83■■□□□ 1.09
CLDN3O15551 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.83■■□□□ 1.09
CLDN3O15551 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.83■■□□□ 1.09
CLDN3O15551 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.83■■□□□ 1.09
CLDN3O15551 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLDN3O15551 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.83■■□□□ 1.09
CLDN3O15551 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.83■■□□□ 1.08
CLDN3O15551 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLDN3O15551 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLDN3O15551 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLDN3O15551 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLDN3O15551 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.82■■□□□ 1.08
CLDN3O15551 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLDN3O15551 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CLDN3O15551 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
CLDN3O15551 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CLDN3O15551 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 AC092667.1-201ENST00000434301 2586 ntBASIC21.81■■□□□ 1.08
CLDN3O15551 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.81■■□□□ 1.08
CLDN3O15551 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CLDN3O15551 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.81■■□□□ 1.08
CLDN3O15551 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
CLDN3O15551 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLDN3O15551 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms