Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 AC005082.1-201ENST00000413042 2259 ntBASIC14.59□□□□□ -0.07
SMKR1H3BMG3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 Z82202.1-201ENST00000623446 1880 ntBASIC14.59□□□□□ -0.07
SMKR1H3BMG3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC14.59□□□□□ -0.07
SMKR1H3BMG3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SMKR1H3BMG3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SMKR1H3BMG3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 AC005332.8-201ENST00000622750 2735 ntBASIC14.57□□□□□ -0.08
SMKR1H3BMG3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SMKR1H3BMG3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms